suba logo
AT5G57860.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); Has 92 Blast hits to 92 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 45; Viruses - 16; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111UGJeggNOG:KOG4495EMBL:AK227953EMBL:AY088851
EMBL:BT004576EMBL:CP002688EnsemblPlants:AT5G57860EnsemblPlants:AT5G57860.1
EnsemblPlants:AT5G57860.2EnsemblPlants:AT5G57860.3entrez:835896ExpressionAtlas:Q8L8S0
GeneID:835896Gramene:AT5G57860.1Gramene:AT5G57860.2Gramene:AT5G57860.3
hmmpanther:PTHR10666HOGENOM:HOG000030610IntAct:Q8L8S0InterPro:IPR000626
InterPro:IPR029071OMA:TYFIQCEPfam:PF00240Pfscan:PS50053
PhylomeDB:Q8L8S0PROSITE:PS50053Proteomes:UP000006548RefSeq:NP_568868.1
RefSeq:NP_851205.1RefSeq:NP_851206.1SMART:SM00213STRING:3702.AT5G57860.1
SUPFAM:SSF54236TAIR:AT5G57860UniGene:At.29307UniProt:Q8L8S0
Coordinates (TAIR10) chr5:+:23437991..23439087
Molecular Weight (calculated) 10900.10 Da
IEP (calculated) 4.28
GRAVY (calculated) -0.30
Length 95 amino acids
Sequence (TAIR10)
(BLAST)
1: MAMYIRVKRM KTTYFIQCDP TETVLDVKQK LFALIEQPVN NQRLVLMSTE EVLEDSKSLA DQKVENDAVV ALTLKKDDNE FEDVNIAQPT DFSLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)