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AT1G50280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, leaf lamina base, leaf whorl, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G19850.1); Has 794 Blast hits to 779 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 789; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:26675eggNOG:ENOG410IVEGeggNOG:ENOG410YE7GEMBL:AC007980
EMBL:AY080713EMBL:BT003005EMBL:CP002684EnsemblPlants:AT1G50280
EnsemblPlants:AT1G50280.1entrez:841450GeneID:841450Genevisible:Q8RXR6
GO:GO:0016567Gramene:AT1G50280.1hmmpanther:PTHR32370hmmpanther:PTHR32370:SF15
HOGENOM:HOG000241117InParanoid:Q8RXR6IntAct:Q8RXR6InterPro:IPR011333
InterPro:IPR027356KEGG:ath:AT1G50280OMA:EEVFYGSPaxDb:Q8RXR6
Pfam:PF03000Pfam:Q8RXR6Pfscan:PS51649PhylomeDB:Q8RXR6
PIR:B96539PRIDE:Q8RXR6PRO:PR:Q8RXR6PROSITE:PS51649
ProteinModelPortal:Q8RXR6Proteomes:UP000006548RefSeq:NP_175446.2STRING:3702.AT1G50280.1
SUPFAM:SSF54695TAIR:AT1G50280UniGene:At.68562UniPathway:UPA00143
UniProt:Q8RXR6
Coordinates (TAIR10) chr1:-:18623857..18626292
Molecular Weight (calculated) 60037.40 Da
IEP (calculated) 8.97
GRAVY (calculated) -0.33
Length 525 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPLNDLKIN LNGQYTFFLN QNVISKYSGS LRKMIKQSKK KRNKKKRIIT IEINDFPGGP DGFELVSRFC YHNGEILIDV SNVSTLYCCS VFLGMSEKFC
101: FSNLFLQTEK FLEEVFYGSW SDIVSCLKNC EQVFFQADSY GLVDKLIFAA LNKISQNSDD FSSSSLSSFA SSLSPEMAKN TSESDGRYIS RSVACGRSNE
201: WWFEDMTNLS PKIILKLVMI IGAYKTNIKS LVLTRFLLHY LKTKLQTKSR TTTELMRNKL EYSDLADTAV RGVISAGTRT FSCRKLFWIL RVLSSFSLSR
301: ESRIGLETLI GEMLEQATLD DLLISARGSR ESGFYNVDLV IRLLKVFVKN REEEEEESRE RNMKEIGKLI DKYLREISPD QNLKVPKFLG VAESLPDSAR
401: DCFDGVYRAI DIYLQSHPNL TPQDRTEICR CLNYKKLTME TCKQLARNPK IPPEIAIEAL KSRCGNQEHT TSDVKVANKS FSCRYSEEKK KPVVLHLEIT
501: EKLAERLKTK GGYNLKVMDS FREGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)