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AT3G15570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.778
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G52770.1); Has 825 Blast hits to 823 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 824; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHVWeggNOG:ENOG410YFS1EMBL:AB028619EMBL:AK175160
EMBL:AK175176EMBL:AK175473EMBL:AK175544EMBL:CP002686
EnsemblPlants:AT3G15570EnsemblPlants:AT3G15570.1entrez:820797GeneID:820797
Gramene:AT3G15570.1hmmpanther:PTHR32370hmmpanther:PTHR32370:SF16HOGENOM:HOG000237573
InterPro:IPR027356KEGG:ath:AT3G15570ncoils:CoilOMA:KDSIPCN
Pfam:PF03000Pfscan:PS51649PhylomeDB:Q9LRP8PROSITE:PS51649
Proteomes:UP000006548RefSeq:NP_188176.1STRING:3702.AT3G15570.1TAIR:AT3G15570
UniGene:At.39026UniGene:At.53325UniProt:Q9LRP8
Coordinates (TAIR10) chr3:-:5270267..5271700
Molecular Weight (calculated) 50207.30 Da
IEP (calculated) 9.48
GRAVY (calculated) -0.36
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKTLSPEPV TIYGNRQETF VGDMEYYTYF DESCIQDMNY FVKTITGIKS KGIRPDLIGS IIAHYASKWL PDLSGNVSAI ISSTSLESKN NHNDTQPESV
101: TASVMKKRFF VETLIGILPP EKDSVPCNFL LRLLRTAKMV GANPNYLTEL ETRVSWQLDQ ASLKELMIPS FSYTSGTLLD IELVTRLVNK FSGLDSEGVK
201: TAAALVKVAK LVDSYLAEAA VDGGLALPEF ISLITALPSH ARTTEDGLYR AIDTYLKAHP QVLKQERKEL CRLIDSRKLS PEAALHAAQN DRLPVRAIIG
301: VLFTEQTKLS RHIDCNSSSI SSTTRSPTNA SGSHYLEGGS AARCLSKREM NVQQAEIRRL REDVVRLQSQ CGAMHFQLER LMEKKSSGGS KGFFRWKRLG
401: LVPSIRGSVS VEKGEEESGD NGEGFEPRTP GNMKTRLVKG RTTPSRWRKS MS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)