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AT3G17640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G03440.1); Has 49064 Blast hits to 19347 proteins in 858 species: Archae - 12; Bacteria - 2546; Metazoa - 6658; Fungi - 321; Plants - 36853; Viruses - 0; Other Eukaryotes - 2674 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:AB022219EMBL:CP002686
EnsemblPlants:AT3G17640EnsemblPlants:AT3G17640.1entrez:821031Gene3D:3.80.10.10
GeneID:821031Gramene:AT3G17640.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF105
HOGENOM:HOG000116557InterPro:IPR001611InterPro:IPR013210InterPro:IPR032675
KEGG:ath:AT3G17640OMA:RSPCAYAPfam:PF08263Pfam:PF13855
Pfscan:PS51450PhylomeDB:Q9LUN3PROSITE:PS51450Proteomes:UP000006548
RefSeq:NP_188391.1SMR:Q9LUN3STRING:3702.AT3G17640.1SUPFAM:SSF52058
TAIR:AT3G17640UniGene:At.53360UniProt:Q9LUN3
Coordinates (TAIR10) chr3:+:6032393..6033583
Molecular Weight (calculated) 42922.50 Da
IEP (calculated) 6.93
GRAVY (calculated) 0.14
Length 396 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYTFFLLLL SLVHSTFSSL APTDRAALQS IRDSLTDMPG SAFFSSWDFT VPDPCSSFSG LTCSSRGRVT GLTLGPNLSG SLSPSISILT HLTQLILYPG
101: SVTGPLPPRF DSLPLLRVIS LTRNRLTGPI PVSFSSLSNL HTLDLSYNQL SGSLPPFLTT LPRLKVLVLA SNHFSNNLKP VSSPLFHLDL KMNQISGQLP
201: PAFPTTLRYL SLSGNSMQGT INAMEPLTEL IYIDLSMNQF TGAIPSSLFS PTISTMFLQR NNFTSIATSN ATSLLPEGSI VDLSHNSISG ELTPALVGAE
301: ALFLNNNRLT GDIPEEYVKS LINGTTKQLF LQHNYFTRFP WNSGLQLPDS VSLCLSYNCM ETDPVVGLST CPIEVAPLLS RPASQCSRFY NHSSTG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)