AT4G37080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF547 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2); Has 1854 Blast hits to 1696 proteins in 329 species: Archae - 6; Bacteria - 397; Metazoa - 313; Fungi - 62; Plants - 588; Viruses - 2; Other Eukaryotes - 486 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:17474205..17476716 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67577.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.03 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||
| Length | 597 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMFRGILKSA KDEKKKMESQ GNGAVANSGK SLVNRRRANK EKKMDLLQDV DKLKRKLRQE ENVHRALERA FTRPLGALPR LPSYLPRHTL ELLAEVAVLE 101: EEVVRLEEQV VNFRQGLYQE AVYISSKRNL ESPNNNSLNE NSPVRSTKHQ RSKSMSQHEF NSMITPTKKH QQSLSRSISS RKLFSSDQTV NDRSGQRVVS 201: GKQASPKSNL SSVTNTKPVD VRGKENQTSS NASKDKKNKE SPEKKLGRFL TSVKKKKPLI KPEAAADKHS ESTKLQLDDR LADQDKAQES VSGSSSEDKT 301: LQSGNVANRV SEDLLKCLVT IILRISSSKD IVLDPYNNCS EWRTRELGAY KHFSSVDTSS VDLGRRINAS FLIHRLKFLL NKLSVVNLDG LSHQQKLAFW 401: INTYNSCVMN AFLEHGIPAT PEMVVALMQK ATIIVGGHSL NAITIEHFIL RLPYHLKFTC PKTATHEEMR AHSTFGLEWS EPLVTFALAC GSWSSPAVRV 501: YTAANVEEEL EAAKRDYLQA SVGISKNNKL MLPKVLDWYL LDFAKDLESL LDWVCLQLPD KLREEATKCM ERKNKESLME LVQVVPYDFS FRLLLHQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)