AT2G28150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF966) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 2510 Blast hits to 686 proteins in 184 species: Archae - 0; Bacteria - 433; Metazoa - 315; Fungi - 216; Plants - 186; Viruses - 4; Other Eukaryotes - 1356 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12000015..12002227 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60087.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.27 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||
| Length | 540 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEARMKKYSR EVSPERAKVW TEKSPKYHQK IKKVQIVYYL SKNRQLEHPH FMEVLISSPN GLYLRDVIER LNVLRGRGMA SMYSWSSKRS YRNGFVWHDL 101: SEDDLILPAN GNEYVLKGSE LFDESNSDHF SPIVNLATQN MKQIVVEPPS SRSMDDSSSS SSMNNGKGTN KHSHEDDELS PPALRSVSSS GVSPDSRDAK 201: NSSSWCLAEY KVYKSEGLAD ASTQTDETVS GRSKTPIETF SRGVSTDEDV SSEPETSENN LVSEASCAGK ERESAEISRN SVSPPFSNSA SSLGGKTDTL 301: ESLIRADVSK MNSFRILEQE DVRMPAIPRL RASNMLMQLI SCGSISVKDN NFGLVPTYKP KFGHSKFPSP FFSSSFMMGD LDRLSETPSL MGLRMEEKEY 401: FSGSLVETKL QKKDAADSNA SLKRSSSYNG DRASNQMGVA ENGDSKPDSS KNNPSSRKAS SILGKQQPLV SEKRRDSSED TTKNIPCTTK THDACSKRIT 501: ESLRKPDSFR EDEERVIKID ERLASGARVR IESKVPSEEP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)