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AT5G15310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 16
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 16 (MYB16); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 106 (TAIR:AT3G01140.1); Has 8813 Blast hits to 8178 proteins in 474 species: Archae - 0; Bacteria - 0; Metazoa - 721; Fungi - 488; Plants - 5846; Viruses - 4; Other Eukaryotes - 1754 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AF370613EMBL:AK228474
EMBL:AL353993EMBL:AY519624EMBL:BT028929EMBL:CP002688
EnsemblPlants:AT5G15310EnsemblPlants:AT5G15310.1entrez:831383ExpressionAtlas:Q9LXF1
Gene3D:1.10.10.60GeneID:831383GO:GO:0000902GO:GO:0003677
GO:GO:0003700GO:GO:0006355GO:GO:0009651GO:GO:0009723
GO:GO:0009733GO:GO:0009739GO:GO:0009751GO:GO:0009753
GO:GO:0046686Gramene:AT5G15310.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF626
HOGENOM:HOG000237600InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
OMA:INSTMHEPfam:PF00249Pfscan:PS51294PhylomeDB:Q9LXF1
PIR:T49966PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_197035.1
SMART:SM00717SMR:Q9LXF1STRING:3702.AT5G15310.1SUPFAM:SSF46689
TAIR:AT5G15310tair10-symbols:ATMIXTAtair10-symbols:ATMYB16tair10-symbols:MYB16
UniGene:At.5394UniProt:Q9LXF1
Coordinates (TAIR10) chr5:+:4974894..4976106
Molecular Weight (calculated) 36945.40 Da
IEP (calculated) 7.02
GRAVY (calculated) -0.83
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSPCCDKL GLKKGPWTPE EDQKLLAYIE EHGHGSWRSL PEKAGLHRCG KSCRLRWTNY LRPDIKRGKF NLQEEQTIIQ LHALLGNRWS AIATHLPKRT
101: DNEIKNYWNT HLKKRLVKMG IDPVTHKPKN ETPLSSLGLS KNAAILSHTA QWESARLEAE ARLARESKLL HLQHYQTKTS SQPHHHHGFT HKSLLPNWTT
201: KPHEDQQQLE SPTSTVSFSE MKESIPAKIE FVGSSTGVTL MKEPEHDWIN STMHEFETTQ MGEGIEEGFT GLLLGGDSID RSFSGDKNET AGESSGGDCN
301: YYEDNKNYLD SIFNFVDPSP SDSPMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)