AT1G18810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phytochrome kinase substrate-related | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
phytochrome kinase substrate-related; BEST Arabidopsis thaliana protein match is: phytochrome kinase substrate 1 (TAIR:AT2G02950.1); Has 458 Blast hits to 394 proteins in 45 species: Archae - 0; Bacteria - 2; Metazoa - 60; Fungi - 9; Plants - 109; Viruses - 2; Other Eukaryotes - 276 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6485709..6486872 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43290.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.48 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.90 | ||||||||||||||||||||||||||||||||
| Length | 387 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDAEKKSAHF RQISSYKPQL LVLSSIQENP SSKISEKANI KADNDAEIGV FGAEKYFSMK LDHVDSTADI TKQHEKENTH DHPNANPNPN PNPHPHPHPQ 101: LTKTTSSRSK TSRHGTPSVR SESSCNSQTF LMRINNHNEN KQRKMNDTSI SFGGFRCYGP CSGVKTVHTD PKNSCKSRNS DRDFVAYDAR KHNDKPRLHF 201: EAKKADFHAQ EKISLPIQRS DIAMNLERKL SLLTWDAIPN QLSTKNNNHN NNGNNSSMSS NTQEEETASV ASSDLFEIEN ITSSVYEPSE ASIGWSVVTG 301: SMADQSVISD FDMMKRVTRN GPVVKTKPVI GEKVRSAGFL SGCKSHKAVS VVDSSRKVKE TAKVDHHEMS HQKKFKTEIR IQDLSFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)