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AT5G10250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Encodes a protein with an N-terminal BTB/POZ domain and a C-terminal NPH3 family domain. dot3 mutants have defects in shoot and primary root growth and produce an aberrant parallel venation pattern in juvenile leaves.
Computational
Description (TAIR10)
DEFECTIVELY ORGANIZED TRIBUTARIES 3 (DOT3); FUNCTIONS IN: signal transducer activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf primordium; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G64330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK41eggNOG:ENOG41113GEEMBL:AL360334EMBL:CP002688
EnsemblPlants:AT5G10250EnsemblPlants:AT5G10250.1entrez:830889GeneID:830889
Genevisible:Q9LFU0GO:GO:0010087GO:GO:0010305GO:GO:0010588
GO:GO:0016567GO:GO:0048367GO:GO:0080022Gramene:AT5G10250.1
hmmpanther:PTHR32370hmmpanther:PTHR32370:SF37HOGENOM:HOG000239180InParanoid:Q9LFU0
InterPro:IPR000210InterPro:IPR011333InterPro:IPR027356KEGG:ath:AT5G10250
ncoils:CoilOMA:CASEYLYPaxDb:Q9LFU0Pfam:PF00651
Pfam:PF03000Pfam:Q9LFU0Pfscan:PS50097Pfscan:PS51649
PhylomeDB:Q9LFU0PIR:T50813PRIDE:Q9LFU0PRO:PR:Q9LFU0
PROSITE:PS50097PROSITE:PS51649ProteinModelPortal:Q9LFU0Proteomes:UP000006548
RefSeq:NP_196587.1SUPFAM:SSF54695TAIR:AT5G10250tair10-symbols:DOT3
UniGene:At.54800UniPathway:UPA00143UniProt:Q9LFU0
Coordinates (TAIR10) chr5:-:3217028..3219368
Molecular Weight (calculated) 69977.10 Da
IEP (calculated) 8.01
GRAVY (calculated) -0.51
Length 607 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSVSAAERL KSFGDAGPVC NKSIIFPSRV VTLANSFEKK DRSWYVKSQI PTDLSIQVND ITFKAHKFPL ISKCGYISSI ELKPSTSENG YHLKLENFPG
101: GADTFETILK FCYNLPLDLN PLNVAPLRCA SEYLYMTEEF EAGNLISKTE AFITFVVLAS WRDTLTVLRS CTNLSPWAEN LQIVRRCCDL LAWKACNDNN
201: IPEDVVDRNE RCLYNDIATL DIDHFMRVIT TMKARRAKPQ ITGKIIMKYA DNFLPVINDD LEGIKGYGLG KNELQFSVNR GRMEESNSLG CQEHKETIES
301: LVSVLPPQSG AVSCHFLLRM LKTSIVYSAS PALISDLEKR VGMALEDANV CDLLIPNFKN EEQQERVRIF EFFLMHEQQQ VLGKPSISKL LDNYLAEIAK
401: DPYLPITKFQ VLAEMLPENA WKCHDGLYRA IDMFLKTHPS LSDHDRRRLC KTMNCEKLSL DACLHAAQND RLPLRTIVQI NTQVLFSEQV KMRMMMQDKL
501: PEKEEENSGG REDKRMSRDN EIIKTLKEEL ENVKKKMSEL QSDYNELQQE YERLSSKQKS SHNWGLRWQK VKKSFQTKRE DEETRERTRR RSSTGQRTSF
601: RRRMSMS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)