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AT2G16380.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.885
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT4G34580.1); Has 2691 Blast hits to 2676 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 819; Fungi - 614; Plants - 876; Viruses - 0; Other Eukaryotes - 382 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AC007047EMBL:AF439836
EMBL:CP002685EnsemblPlants:AT2G16380EnsemblPlants:AT2G16380.1entrez:816135
Gene3D:3.40.525.10GeneID:816135Genevisible:Q9SIW3GO:GO:0000139
GO:GO:0005215GO:GO:0005886GO:GO:0015031Gramene:AT2G16380.1
hmmpanther:PTHR23324hmmpanther:PTHR23324:SF77HOGENOM:HOG000196557InParanoid:Q9SIW3
InterPro:IPR001071InterPro:IPR001251InterPro:IPR011074iPTMnet:Q9SIW3
KEGG:ath:AT2G16380ncoils:CoilOMA:MADTKQDPaxDb:Q9SIW3
Pfam:PF00650Pfam:PF03765Pfam:Q9SIW3Pfscan:PS50191
PhylomeDB:Q9SIW3PIR:F84539PRIDE:Q9SIW3PRINTS:PR00180
PRO:PR:Q9SIW3PROSITE:PS50191ProteinModelPortal:Q9SIW3Proteomes:UP000006548
RefSeq:NP_565387.1SMART:SM00516SMART:SM01100SMR:Q9SIW3
STRING:3702.AT2G16380.1SUPFAM:SSF46938SUPFAM:SSF52087TAIR:AT2G16380
TMHMM:TMhelixUniGene:At.14303UniProt:Q9SIW3
Coordinates (TAIR10) chr2:+:7085972..7088858
Molecular Weight (calculated) 62863.00 Da
IEP (calculated) 9.16
GRAVY (calculated) -0.56
Length 547 amino acids
Sequence (TAIR10)
(BLAST)
001: MADTKQDMEN SEDGRKLVKM SSLKQKAISA SNRFKNSFKK KTRRTSSKIV SVANTDDING DDYLSVEAFR QVLVLDDLLP PKHDDLHMML RFLRARKFDK
101: EKAKQMWSDM LQWRMDFGVD TIIEDFEFEE IDQVLKHYPQ GYHGVDKEGR PVYIERLGQI DANKLLQATT MDRYEKYHVK EFEKMFKIKF PSCSAAAKKH
201: IDQSTTIFDV QGVGLKNFNK SARELLQRLL KIDNDNYPET LNRMFIINAG PGFRLLWAPI KKFLDPKTTS KIHVLGNKYQ PKLLEAIDAS ELPYFFGGLC
301: TCADKGGCLR SDKGPWNDPE LLKIARNPEA RFSTISEEDY LLVEEGTSMS MVFEPLERNK MKTIEENVSE KHIDAVDKFM ALSLPPKPHL KTLRKGKEPQ
401: KKDDSFLVGG VIAFVMGIVA MLRLSKAVPR KLTDVALLTN SVYYEEAKMS KPNQDEVSAP PVSSSEYVIM VKRMAELEEK YKSLDSKSAD EALEKDDKLQ
501: AALNRVQVLE HELSETKKAL DETMVNQQGI LAYIEKKNKK KRMFFRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)