AT3G56060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glucose-methanol-choline (GMC) oxidoreductase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: alcohol metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT5G51950.1); Has 10629 Blast hits to 10467 proteins in 1108 species: Archae - 4; Bacteria - 3922; Metazoa - 819; Fungi - 1505; Plants - 305; Viruses - 15; Other Eukaryotes - 4059 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20803328..20805983 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63361.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.71 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 577 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNFHIFRFFQ FILVAVFIFH DSCYSDEAGN YRFMKDATLA PKLSHFDYII IGGGTAGCAL AATLSQNATV LVLERGGSPY DDPAATDIGN FANTLLNITP 101: NSWSQLFISE DGVFNSRARV LGGGTVINAG FYSRAEEDFV AEAGWERDEV EAAYEWVEKK VVFEPPVNKW QSAFRDGLLE AGVTPYNGFT YEHIVGTKFG 201: GTIFDRDGHR HTAANLLEYA NPNMIVVYLH ASVHKILFTI KGNQRPKAYG VIFLDANGVS YKAELATQDS TMSEVILSAG AIASPQLLML SGVGPAAHLA 301: AYRVNPVIVD QPMVGQGMGD NPMNPVFIPS PEPVEVSLVQ AVGITKFGSY IEGGSALSLS ISLTRSFFDG VLNLLKKTKL PTQSISKFFK SLDLTLNVTT 401: KAGVIIQKVN GPLSRGHLEL RNTNPDDNPS VTFNYFKDPE DLNKCVEGLS TIIKVIDSKG YSKYKYPLAS ARGLLNLILA LPTNLRPRHI TSTFDLEQYC 501: IDTVMTIYHY HGGCQVGKVV DNNYKVLGVD ALRIIDGSTF LKSPGTNPQA TIMMLGRYMG QKILRERMAF RGKEEET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)