AT4G31820.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Phototropic-responsive NPH3 family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
A member of the NPY family genes (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Encodes a protein with similarity to NHP3. Contains BTB/POZ domain. Promoter region has canonical auxin response element binding site and Wus binding site. Co-localizes to the late endosome with PID. Regulates cotyledon development through control of PIN1 polarity in concert with PID. Also involved in sepal and gynoecia development. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
ENHANCER OF PINOID (ENP); FUNCTIONS IN: signal transducer activity; INVOLVED IN: in 8 processes; LOCATED IN: late endosome, plasma membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G67440.1); Has 898 Blast hits to 870 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 2; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:15390788..15393627 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 64405.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 571 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKFMKLGSKP DTFESDGKFV KYAVSDLDSD VTIHVGEVTF HLHKFPLLSK SNRMQRLVFE ASEEKTDEIT ILDMPGGYKA FEICAKFCYG MTVTLNAYNI 101: TAVRCAAEYL EMTEDADRGN LIYKIEVFLN SGIFRSWKDS IIVLQTTRSL LPWSEDLKLV GRCIDSVSAK ILVNPETITW SYTFNRKLSG PDKIVEYHRE 201: KREENVIPKD WWVEDVCELE IDMFKRVISV VKSSGRMNNG VIAEALRYYV ARWLPESMES LTSEASSNKD LVETVVFLLP KVNRAMSYSS CSFLLKLLKV 301: SILVGADETV REDLVENVSL KLHEASVKDL LIHEVELVHR IVDQFMADEK RVSEDDRYKE FVLGNGILLS VGRLIDAYLA LNSELTLSSF VELSELVPES 401: ARPIHDGLYK AIDTFMKEHP ELTKSEKKRL CGLMDVRKLT NEASTHAAQN ERLPLRVVVQ VLYFEQLRAN HSPVASVAAS SHSPVEKTEE NKGEEATKKV 501: ELSKKSRGSK STRSGGGAQL MPSRSRRIFE KIWPGKGEIS NKSSEVSSGS SQSPPAKSSS SSSRRRRHSI S |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)