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AT5G58670.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phospholipase C1
Curator
Summary (TAIR10)
phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one).
Computational
Description (TAIR10)
phospholipase C1 (PLC1); CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), EF-Hand 1, calcium-binding site (InterPro:IPR018247), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase C1 (TAIR:AT4G38530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:MONOMER-1622BioGrid:21225BRENDA:3.1.4.11EC:3.1.4.11
eggNOG:ENOG410XPSWeggNOG:KOG0169EMBL:AB020755EMBL:CP002688
EMBL:D38544EMBL:U76423EnsemblPlants:AT5G58670EnsemblPlants:AT5G58670.1
entrez:835981Gene3D:1.10.238.10Gene3D:2.60.40.150Gene3D:3.20.20.190
GeneID:835981Genevisible:Q39032GO:GO:0004435GO:GO:0004629
GO:GO:0004871GO:GO:0005622GO:GO:0005886GO:GO:0009409
GO:GO:0009414GO:GO:0009651GO:GO:0009737GO:GO:0009738
GO:GO:0016042GO:GO:0035556Gramene:AT5G58670.1hmmpanther:PTHR10336
hmmpanther:PTHR10336:SF105HOGENOM:HOG000244119InParanoid:Q39032InterPro:IPR000008
InterPro:IPR000909InterPro:IPR001192InterPro:IPR001711InterPro:IPR011992
InterPro:IPR017946InterPro:IPR018247iPTMnet:Q39032KEGG:00562+3.1.4.11
KEGG:04070+3.1.4.11KEGG:ath:AT5G58670KO:K05857OMA:TECFPSP
PANTHER:PTHR10336PaxDb:Q39032Pfam:PF00168Pfam:PF00387
Pfam:PF00388Pfam:PF09279Pfam:Q39032Pfscan:PS50004
Pfscan:PS50007Pfscan:PS50008PhylomeDB:Q39032PRIDE:Q39032
PRINTS:PR00390PRO:PR:Q39032PROSITE:PS00018PROSITE:PS50004
PROSITE:PS50007PROSITE:PS50008ProteinModelPortal:Q39032Proteomes:UP000006548
Reactome:R-ATH-114604Reactome:R-ATH-1855204Reactome:R-ATH-202433Reactome:R-ATH-399997
Reactome:R-ATH-416476Reactome:R-ATH-434316Reactome:R-ATH-5607764RefSeq:NP_568881.1
scanprosite:PS00018SMART:SM00148SMART:SM00149SMART:SM00239
SMR:Q39032STRING:3702.AT5G58670.1SUPFAM:SSF47473SUPFAM:SSF49562
SUPFAM:SSF51695SwissPalm:Q39032TAIR:AT5G58670tair10-symbols:ATPLC
tair10-symbols:ATPLC1tair10-symbols:PLC1UniGene:At.10551UniProt:Q39032
Coordinates (TAIR10) chr5:-:23704457..23706751
Molecular Weight (calculated) 64317.70 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.49
Length 561 amino acids
Sequence (TAIR10)
(BLAST)
001: MKESFKVCFC CVRNFKVKSS EPPEEIKNLF HDYSQDDRMS ADEMLRFVIQ VQGETHADIN YVKDIFHRLK HHGVFHPRGI HLEGFYRYLL SDFNSPLPLT
101: REVWQDMNQP LSHYFLYTGH NSYLTGNQLN SNSSIEPIVK ALRNGVRVIE LDLWPNSSGK EAEVRHGGTL TSREDLQKCL NVVKENAFQV SAYPVVLTLE
201: DHLTPILQKK VAKMVSKTFG GSLFQCTDET TECFPSPESL KNKILISTKP PKEYLQTQIS KGSTTDESTR AKKISDAEEQ VQEEDEESVA IEYRDLISIH
301: AGNRKGGLKN CLNGDPNRVI RLSMSEQWLE TLAKTRGPDL VKFTQRNLLR IFPKTTRFDS SNYDPLVGWI HGAQMVAFNM QSHGRYLWMM QGMFKANGGC
401: GYVKKPDVLL SNGPEGEIFD PCSQNLPIKT TLKVKIYTGE GWNMDFPLDH FDRYSPPDFY AKVGIAGVPL DTASYRTEID KDEWFPIWDK EFEFPLRVPE
501: LSLLCITVKD YDSNTQNDFA GQTCFPLSEV RPGIRAVRLH DRAGEVYKHV RLLMRFVLEP R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)