AT4G02130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.865 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : galacturonosyltransferase 6 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with putative galacturonosyltransferase activity. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
galacturonosyltransferase 6 (GATL6); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 5 (TAIR:AT1G02720.2); Has 2064 Blast hits to 2054 proteins in 482 species: Archae - 0; Bacteria - 957; Metazoa - 296; Fungi - 4; Plants - 738; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:945764..946804 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38963.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.03 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 346 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLWITRFAGL FSAAMAVIVL SPSLQSFPPA AAIRSSPSPI FRKAPAVFNN GDECLSSGGV CNPSLVHVAI TLDVEYLRGS IAAVNSILQH SVCPESVFFH 101: FIAVSEETNL LESLVRSVFP RLKFNIYDFA PETVRGLISS SVRQALEQPL NYARSYLADL LEPCVNRVIY LDSDLVVVDD IAKLWKTSLG SRIIGAPEYC 201: HANFTKYFTG GFWSEERFSG TFRGRKPCYF NTGVMVIDLK KWRRGGYTKR IEKWMEIQRR ERIYELGSLP PFLLVFSGHV APISHRWNQH GLGGDNVRGS 301: CRDLHPGPVS LLHWSGSGKP WIRLDSKRPC PLDALWTPYD LYRHSH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)