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AT5G57550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 25
Curator
Summary (TAIR10)
xyloglucan endotransglycosylase-related protein (XTR3)
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 25 (XTH25); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: plant-type cell wall biogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglycosylase 6 (TAIR:AT4G25810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G57550-MONOMERCAZy:GH16EC:2.4.1.207eggNOG:COG2273
eggNOG:ENOG410II9PEMBL:AB011482EMBL:AF163823EMBL:AY125495
EMBL:AY143939EMBL:CP002688EMBL:U43485EnsemblPlants:AT5G57550
EnsemblPlants:AT5G57550.1entrez:835859Gene3D:2.60.120.200GeneID:835859
Genevisible:Q38907GO:GO:0004553GO:GO:0005618GO:GO:0009832
GO:GO:0010411GO:GO:0016762GO:GO:0048046GO:GO:0071555
Gramene:AT5G57550.1hmmpanther:PTHR31062hmmpanther:PTHR31062:SF32HOGENOM:HOG000236368
InParanoid:Q38907InterPro:IPR000757InterPro:IPR008263InterPro:IPR010713
InterPro:IPR013320InterPro:IPR016455KEGG:ath:AT5G57550KO:K08235
OMA:NPHHIVFPaxDb:Q38907Pfam:PF00722Pfam:PF06955
Pfam:Q38907Pfscan:PS51762PhylomeDB:Q38907PIR:S71222
PIRSF:PIRSF005604PRIDE:Q38907PRO:PR:Q38907PROSITE:PS01034
PROSITE:PS51762ProteinModelPortal:Q38907Proteomes:UP000006548RefSeq:NP_568859.2
scanprosite:PS01034SMR:Q38907STRING:3702.AT5G57550.1SUPFAM:SSF49899
TAIR:AT5G57550tair10-symbols:XTH25tair10-symbols:XTR3TMHMM:TMhelix
UniGene:At.7483UniProt:Q38907
Coordinates (TAIR10) chr5:-:23305055..23306384
Molecular Weight (calculated) 32574.50 Da
IEP (calculated) 8.30
GRAVY (calculated) -0.46
Length 284 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRSTFILSL LFTLTVSTTT LFSPVFAGTF DTEFDITWGD GRGKVLNNGE LLTLSLDRAS GSGFQTKKEY LFGKIDMQLK LVPGNSAGTV TAYYLKSKGD
101: TWDEIDFEFL GNLTGDPYTM HTNVYTQGKG DREQQFHLWF DPTADFHTYS VLWNPHHIVF MVDDIPVREF KNLQHMGIQY PKLQPMRLYS SLWNADQWAT
201: RGGLVKTDWS KAPFTASYRN FRADACVSSG GRSSCPAGSP RWFSQRLDLT AEDKMRVVQR KYMIYNYCTD TKRFPQGFPK ECRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)