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AT1G76090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21515817 (2011): endoplasmic reticulum
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sterol methyltransferase 3
Curator
Summary (TAIR10)
Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway.
Computational
Description (TAIR10)
sterol methyltransferase 3 (SMT3); CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: sterol methyltransferase 2 (TAIR:AT1G20330.1); Has 10191 Blast hits to 10184 proteins in 2043 species: Archae - 312; Bacteria - 6392; Metazoa - 125; Fungi - 424; Plants - 648; Viruses - 0; Other Eukaryotes - 2290 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G76090-MONOMERBioCyc:MetaCyc:AT1G76090-MONOMEREC:2.1.1.143eggNOG:ENOG410XP5G
eggNOG:KOG1269EMBL:AC009978EMBL:AF375397EMBL:AY113031
EMBL:CP002684EMBL:U71400EnsemblPlants:AT1G76090EnsemblPlants:AT1G76090.1
entrez:843941Gene3D:3.40.50.150GeneID:843941Genevisible:Q94JS4
GO:GO:0003838GO:GO:0005783GO:GO:0016021GO:GO:0016126
GO:GO:0030797Gramene:AT1G76090.1gramene_pathway:2.1.1.143gramene_pathway:PWY-2541
gramene_plant_reactome:1119370gramene_plant_reactome:6876503hmmpanther:PTHR10108hmmpanther:PTHR10108:SF858
HOGENOM:HOG000171097InParanoid:Q94JS4InterPro:IPR013216InterPro:IPR013705
InterPro:IPR029063InterPro:IPR030384iPTMnet:Q94JS4KEGG:ath:AT1G76090
KO:K08242OMA:KPWWNRLPaxDb:Q94JS4Pfam:PF08241
Pfam:PF08498Pfam:Q94JS4Pfscan:PS51685PhylomeDB:Q94JS4
PRIDE:Q94JS4PRO:PR:Q94JS4PROSITE:PS51685ProteinModelPortal:Q94JS4
Proteomes:UP000006548RefSeq:NP_177736.1SMR:Q94JS4STRING:3702.AT1G76090.1
SUPFAM:SSF53335TAIR:AT1G76090tair10-symbols:SMT3TMHMM:TMhelix
UniGene:At.23490UniPathway:UPA00766UniProt:Q94JS4
Coordinates (TAIR10) chr1:-:28550592..28551671
Molecular Weight (calculated) 40126.20 Da
IEP (calculated) 8.06
GRAVY (calculated) -0.29
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSVALYCTA GLIAGAVYWF ICVLGPAERK GKRASDLSGG SISAEKVKDN YNQYWSFFRK PKEIESAEKV PDFVDTFYNL VTDIYEWGWG QSFHFSPHVP
101: GKSDKDATRI HEEMAVDLIK VKPGQKILDA GCGVGGPMRA IAAHSKAQVT GITINEYQVQ RAKLHNKKAG LDSLCNVVCG NFLKMPFDEN TFDGAYSIEA
201: TCHAPKLEEV YSEIFRVMKP GSLFVSYEWV TTEKYRDDDE EHKDVIQGIE RGDALPGLRS YADIAVTAKK VGFEVVKEKD LAKPPSKPWW NRLKMGRIAY
301: WRNHVVVVIL SAIGVAPKGT VDVHKMLFKT ADYLTRGGET GIFSPMHMIL CRKPEKASE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)