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AT3G23730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28611809 (2017): cytosol
  • PMID:22574745 (2012): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 16
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 16 (XTH16); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 15 (TAIR:AT4G14130.1); Has 2187 Blast hits to 2165 proteins in 308 species: Archae - 0; Bacteria - 273; Metazoa - 0; Fungi - 414; Plants - 1389; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G23730-MONOMERCAZy:GH16EC:2.4.1.207eggNOG:COG2273
eggNOG:ENOG410IVQKEMBL:AP000377EMBL:AY084449EMBL:CP002686
EnsemblPlants:AT3G23730EnsemblPlants:AT3G23730.1entrez:821955ExpressionAtlas:Q8LG58
Gene3D:2.60.120.200GeneID:821955Genevisible:Q8LG58GO:GO:0004553
GO:GO:0005618GO:GO:0010411GO:GO:0016762GO:GO:0042546
GO:GO:0048046GO:GO:0071555Gramene:AT3G23730.1hmmpanther:PTHR31062
hmmpanther:PTHR31062:SF34HOGENOM:HOG000236368InParanoid:Q8LG58InterPro:IPR000757
InterPro:IPR008263InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455
KEGG:ath:AT3G23730KO:K08235OMA:PQHIIFMPaxDb:Q8LG58
Pfam:PF00722Pfam:PF06955Pfam:Q8LG58Pfscan:PS51762
PhylomeDB:Q8LG58PIRSF:PIRSF005604PRIDE:Q8LG58PRO:PR:Q8LG58
PROSITE:PS01034PROSITE:PS51762ProteinModelPortal:Q8LG58Proteomes:UP000006548
RefSeq:NP_566738.1scanprosite:PS01034SMR:Q8LG58STRING:3702.AT3G23730.1
SUPFAM:SSF49899TAIR:AT3G23730tair10-symbols:XTH16UniGene:At.26810
UniProt:Q680R2UniProt:Q8LG58
Coordinates (TAIR10) chr3:+:8550222..8551248
Molecular Weight (calculated) 33148.40 Da
IEP (calculated) 9.62
GRAVY (calculated) -0.38
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)