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AT1G78260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.706
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G22330.1); Has 19754 Blast hits to 15639 proteins in 805 species: Archae - 2; Bacteria - 1288; Metazoa - 9939; Fungi - 2340; Plants - 4423; Viruses - 0; Other Eukaryotes - 1762 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111PGTeggNOG:KOG0149EMBL:AY084982EMBL:BT030002
EMBL:CP002684EnsemblPlants:AT1G78260EnsemblPlants:AT1G78260.1entrez:844161
ExpressionAtlas:Q8LF90Gene3D:3.30.70.330GeneID:844161GO:GO:0000166
GO:GO:0003676Gramene:AT1G78260.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF421
HOGENOM:HOG000276232InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT1G78260
OMA:ATIMPSPPfam:PF00076Pfscan:PS50102PhylomeDB:Q8LF90
PROSITE:PS50102Proteomes:UP000006548RefSeq:NP_565175.1SMART:SM00360
SMR:Q8LF90STRING:3702.AT1G78260.1SUPFAM:SSF54928TAIR:AT1G78260
UniGene:At.43623UniProt:Q8LF90
Coordinates (TAIR10) chr1:+:29447317..29450181
Molecular Weight (calculated) 31469.20 Da
IEP (calculated) 7.28
GRAVY (calculated) -0.75
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQTSYYRSP FGDTTYTKVF VGGLAWETPT DEMRRYFEQF GEILEAVIIT DKNTGKSKGY GFVTFRESDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: PPRGRGQTGS PSQYQSGGPS TYTGMAAPLP PAAAPQLMYP SYGYTYNPDQ FGYHQALYNT QLQQAQYYQQ QQQLYGGGAT SPSSSGATIM PSPYYYGYSL
201: QAPRVPYQHH HHLPQPYNPQ QHHHQRFSSP SFLVYPSNSS FAPPLQGVLS SSTESEAVPQ QVPAAEGEAT TTAPEITTSN TKEPISS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)