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AT5G65390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arabinogalactan protein 7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
arabinogalactan protein 7 (AGP7); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 4 (TAIR:AT5G10430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AB011479EMBL:AF195888EMBL:AY050361EMBL:AY084455
EMBL:AY094049EMBL:CP002688EnsemblPlants:AT5G65390EnsemblPlants:AT5G65390.1
entrez:836664GeneID:836664Genevisible:Q8LG54GO:GO:0005886
GO:GO:0031225Gramene:AT5G65390.1hmmpanther:PTHR36321hmmpanther:PTHR36321:SF1
HOGENOM:HOG000033857InParanoid:Q8LG54KEGG:ath:AT5G65390OMA:NKAFVVG
PaxDb:Q8LG54Pfam:Q8LG54Pfscan:PS51257PRO:PR:Q8LG54
ProteinModelPortal:Q8LG54Proteomes:UP000006548RefSeq:NP_569011.1STRING:3702.AT5G65390.1
TAIR:AT5G65390tair10-symbols:AGP7TMHMM:TMhelixUniGene:At.9241
UniProt:Q8LG54
Coordinates (TAIR10) chr5:-:26128883..26129275
Molecular Weight (calculated) 12510.80 Da
IEP (calculated) 3.95
GRAVY (calculated) 0.25
Length 130 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSKIIEAFF IVALFTTSCL AQAPAPSPTT TVTPPPVATP PPAATPAPTT TPPPAVSPAP TSSPPSSAPS PSSDAPTASP PAPEGPGVSP GELAPTPSDA
101: SAPPPNAALT NKAFVVGSLV AAIIYAVVLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)