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AT5G10430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arabinogalactan protein 4
Curator
Summary (TAIR10)
Encodes arabinogalactan-protein (AGP4).
Computational
Description (TAIR10)
arabinogalactan protein 4 (AGP4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AF060874EMBL:AF082301EMBL:AF372885EMBL:AL353995
EMBL:AY042794EMBL:BT002666EMBL:CP002688EnsemblPlants:AT5G10430
EnsemblPlants:AT5G10430.1entrez:830907GeneID:830907Genevisible:Q9ZT16
GO:GO:0005886GO:GO:0010198GO:GO:0031225Gramene:AT5G10430.1
hmmpanther:PTHR36321hmmpanther:PTHR36321:SF1HOGENOM:HOG000033857InParanoid:Q9ZT16
KEGG:ath:AT5G10430OMA:TAFTAMMPaxDb:Q9ZT16Pfam:Q9ZT16
PIR:T49996PRIDE:Q9ZT16PRO:PR:Q9ZT16ProteinModelPortal:Q9ZT16
Proteomes:UP000006548RefSeq:NP_196605.1STRING:3702.AT5G10430.1TAIR:AT5G10430
tair10-symbols:AGP4tair10-symbols:ATAGP4TMHMM:TMhelixUniGene:At.24507
UniProt:Q9ZT16
Coordinates (TAIR10) chr5:-:3277828..3278235
Molecular Weight (calculated) 12803.20 Da
IEP (calculated) 4.37
GRAVY (calculated) 0.28
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSKIVQVFL MLALFATSAL AQAPAPTPTA TPPPATPPPV ATPPPVATPP PAATPAPATP PPAATPAPAT TPPSVAPSPA DVPTASPPAP EGPTVSPSSA
101: PGPSDASPAP SAAFSNKAFF AGTAFAAIMY AAVLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)