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AT4G03210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 9
Curator
Summary (TAIR10)
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Beta-glucanase (InterPro:IPR008264), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2067 Blast hits to 2047 proteins in 283 species: Archae - 0; Bacteria - 225; Metazoa - 0; Fungi - 377; Plants - 1377; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Protein Annotations
CAZy:GH16EC:2.4.1.207eggNOG:ENOG410IJ71eggNOG:ENOG410YBFU
EMBL:AB493675EMBL:AY085753EnsemblPlants:AT4G03210EnsemblPlants:AT4G03210.1
entrez:828024ExpressionAtlas:C0SVH2ExpressionAtlas:Q8LDW9Gene3D:2.60.120.200
GeneID:828024GO:GO:0004553GO:GO:0005618GO:GO:0010411
GO:GO:0016762GO:GO:0042546GO:GO:0048046GO:GO:0071555
Gramene:AT4G03210.1hmmpanther:PTHR31062hmmpanther:PTHR31062:SF11InterPro:IPR000757
InterPro:IPR008264InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455
iPTMnet:C0SVH2OMA:YSILWSKPaxDb:C0SVH2Pfam:PF00722
Pfam:PF06955Pfam:Q8LDW9Pfscan:PS51762PhylomeDB:C0SVH2
PIR:G85040PIRSF:PIRSF005604PRIDE:C0SVH2PRINTS:PR00737
PROSITE:PS51762ProteinModelPortal:C0SVH2RefSeq:NP_192230.1SMR:C0SVH2
STRING:3702.AT4G03210.1SUPFAM:SSF49899TAIR:AT4G03210tair10-symbols:XTH9
UniGene:At.3932UniGene:At.5453UniProt:C0SVH2UniProt:Q8LDW9
Coordinates (TAIR10) chr4:+:1416019..1417197
Molecular Weight (calculated) 33143.10 Da
IEP (calculated) 4.91
GRAVY (calculated) -0.29
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGMDLFKCV MMIMVLVVSC GEAVSGAKFD ELYRSSWAMD HCVNEGEVTK LKLDNYSGAG FESRSKYLFG KVSIQIKLVE GDSAGTVTAF YMSSDGPNHN
101: EFDFEFLGNT TGEPYIVQTN IYVNGVGNRE QRLNLWFDPT TEFHTYSILW SKRSVVFMVD ETPIRVQKNL EEKGIPFAKD QAMGVYSSIW NADDWATQGG
201: LVKTDWSHAP FVASYKEFQI DACEIPTTTD LSKCNGDQKF WWDEPTVSEL SLHQNHQLIW VRANHMIYDY CFDATRFPVT PLECQHHRHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)