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AT4G30270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15610358 (2005): extracellular region
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22363647 (2012): extracellular region apoplast
  • PMID:21433285 (2011): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 24
Curator
Summary (TAIR10)
encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response.
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 24 (XTH24); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: aging, response to gibberellin stimulus, gibberellic acid mediated signaling pathway, response to brassinosteroid stimulus, plant-type cell wall loosening; LOCATED IN: cell wall, plasma membrane, cytoplasm, plant-type cell wall; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: Xyloglucan endotransglucosylase/hydrolase family protein (TAIR:AT5G57560.1); Has 2202 Blast hits to 2180 proteins in 308 species: Archae - 0; Bacteria - 283; Metazoa - 0; Fungi - 433; Plants - 1389; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Protein Annotations
CAZy:GH16EC:2.4.1.207eggNOG:COG2273eggNOG:ENOG410JBCJ
EMBL:AK229363EMBL:AK230296EMBL:CP002687EnsemblPlants:AT4G30270
EnsemblPlants:AT4G30270.1entrez:829150ExpressionAtlas:Q0WLB0Gene3D:2.60.120.200
GeneID:829150GO:GO:0004553GO:GO:0005618GO:GO:0010411
GO:GO:0016762GO:GO:0042546GO:GO:0048046GO:GO:0071555
Gramene:AT4G30270.1hmmpanther:PTHR31062hmmpanther:PTHR31062:SF20InterPro:IPR000757
InterPro:IPR008263InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455
KEGG:ath:AT4G30270KO:K08235OMA:WSKAPFMPfam:P24806
Pfam:PF00722Pfam:PF06955Pfscan:PS51762PhylomeDB:Q0WLB0
PIRSF:PIRSF005604PROSITE:PS01034PROSITE:PS51762RefSeq:NP_194756.1
scanprosite:PS01034SMR:Q0WLB0STRING:3702.AT4G30270.1SUPFAM:SSF49899
TAIR:AT4G30270tair10-symbols:MERI-5tair10-symbols:MERI5Btair10-symbols:SEN4
tair10-symbols:XTH24UniGene:At.20967UniGene:At.26243UniGene:At.27681
UniGene:At.47568UniGene:At.75103UniProt:P24806UniProt:Q0WLB0
Coordinates (TAIR10) chr4:-:14819445..14820448
Molecular Weight (calculated) 30757.20 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.49
Length 269 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPFKIFFFT TLLVAAFSVS AADFNTDVNV AWGNGRGKIL NNGQLLTLSL DKSSGSGFQS KTEYLFGKID MQIKLVPGNS AGTVTTFYLK SEGSTWDEID
101: FEFLGNMSGD PYTLHTNVYT QGKGDKEQQF HLWFDPTANF HTYSILWNPQ RIILTVDDTP IREFKNYESL GVLFPKNKPM RMYASLWNAD DWATRGGLVK
201: TDWSKAPFMA SYRNIKIDSK PNSNWYTQEM DSTSQARLKW VQKNYMIYNY CTDHRRFPQG APKECTTSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)