AT3G19850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.624 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phototropic-responsive NPH3 family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G50280.1); Has 817 Blast hits to 802 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 810; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6898383..6901157 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62994.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.09 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 554 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLCCDLQIN LNNQFTFFVN QDLISEYSGF LRKMIKQSNK KKKNHKNSRI IIEVEDFPGG SDGFDLVLRF CYGGGISIDV SNVSILHCSS VFLEMTEKLC 101: SSNLLLRTEK FLEGMFYWSW NDIVLCLKSC EQVFLHADSY GLVDKLVFGV LAKIPQNSDV SHVFSSSSPS SSASASASSQ SPETAMIRSY SDKRSTSRSF 201: SCRTSNEWWF DDMSILGPKI IEKLINTLGA HDKNNDSLVL TKFLLHYLKT KVPNKSTNKL EYSGLADTAV QGVVFAAKTA FSCRKMFWVL RVLSGFSISK 301: ESRIGLERVI GEMLDQATLD DLLIPAGGKG EKGVYDVDLV IRLLKVFVRI GNTEEGDQNL RMRRIGKLID KYLREISPDQ NLKVSKFLEV AESLPDSARD 401: WFDGLYRAIN IYLESHPKLS SEDRTKLCRC LNYKKLTLDT CKQLAKNPKI PPNIAVQALK SQQLSNETRP HSREDKNKVN KIWNSRKYLE EKPILVCLKG 501: FDMSEKFEDD LMMNLERKQW NNSEKVSKEK KSEVMSRSVR HGHTHSSSSF PRLC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)