suba logo
AT3G56050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT2G40270.1); Has 41170 Blast hits to 40839 proteins in 1653 species: Archae - 20; Bacteria - 2328; Metazoa - 11695; Fungi - 793; Plants - 23080; Viruses - 152; Other Eukaryotes - 3102 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G56050-MONOMERBioCyc:ARA:GQT-1552-MONOMEReggNOG:COG0515eggNOG:KOG1187
EMBL:AF083761EMBL:AL163763EMBL:AY046021EMBL:AY091435
EMBL:AY099821EMBL:BT000328EMBL:CP002686EnsemblPlants:AT3G56050
EnsemblPlants:AT3G56050.1EnsemblPlants:AT3G56050.2entrez:824771GeneID:824771
Genevisible:Q9LYN6GO:GO:0004672GO:GO:0005524GO:GO:0005886
GO:GO:0016021Gramene:AT3G56050.1Gramene:AT3G56050.2hmmpanther:PTHR27001
hmmpanther:PTHR27001:SF131HOGENOM:HOG000240929InParanoid:Q9LYN6InterPro:IPR000719
InterPro:IPR001245InterPro:IPR011009KEGG:ath:AT3G56050OMA:WSKENES
PaxDb:Q9LYN6Pfam:PF07714Pfam:Q9LYN6Pfscan:PS50011
Pfscan:PS51257PhylomeDB:Q9LYN6PIR:T47722PRIDE:Q9LYN6
PRO:PR:Q9LYN6PROSITE:PS50011ProteinModelPortal:Q9LYN6Proteomes:UP000006548
RefSeq:NP_001078300.1RefSeq:NP_191164.1SMR:Q9LYN6STRING:3702.AT3G56050.1
SUPFAM:SSF56112TAIR:AT3G56050TMHMM:TMhelixUniGene:At.20885
UniGene:At.74877UniProt:Q9LYN6
Coordinates (TAIR10) chr3:-:20798322..20800706
Molecular Weight (calculated) 55234.30 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.14
Length 499 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNNWKSVRL RLQNRTLVFL LVILSFGSCY SLKSQGDGFL ESVTKDLWSD IDAEDLRAVG FHRKLLGRFR NPYTHLNAFR DRPVARATPP SSSVSTRPDA
101: KRSSTLPPPQ KSPPAQHVSA PPPFVHHVTL PSLTSSSKTS SNSTIPIVAG CIAGAVFILL LATGVFFFKS KAGKSVNPWR TGLSGQLQKV FITGVPKLKR
201: SEIEAACEDF SNVIGSCPIG TLFKGTLSSG VEIAVASVAT ASAKEWTNNI EMQFRKKIEM LSKINHKNFV NLLGYCEEEE PFTRILVFEY ASNGTVFEHL
301: HYKESEHLDW VMRLRIAMGI AYCLDHMHGL KPPIVHSNLL SSSVQLTEDY AVKIADFNFG YLKGPSETES STNALIDTNI SETTQEDNVH SFGLLLFELM
401: TGKLPESVQK GDSIDTGLAV FLRGKTLREM VDPTIESFDE KIENIGEVIK SCIRADAKQR PIMKEVTGRL REITGLSPDD TIPKLSPLWW AELEVLSTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)