AT2G47070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : squamosa promoter binding protein-like 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of SPL gene family, encodes DNA binding proteins and putative transcription factors. All have the SBP-box, which encodes the SBP-domain, required for and sufficient for interaction with DNA. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
squamosa promoter binding protein-like 1 (SPL1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: squamosa promoter-binding protein-like 12 (TAIR:AT3G60030.1); Has 940 Blast hits to 885 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 930; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19337144..19340552 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98465.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.64 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 881 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEARIDEGGE AQQFYGSVGK RSVEWDLNDW KWDGDLFLAT QTTRGRQFFP LGNSSNSSSS CSDEGNDKKR RAVAIQGDTN GALTLNLNGE SDGLFPAKKT 101: KSGAVCQVEN CEADLSKVKD YHRRHKVCEM HSKATSATVG GILQRFCQQC SRFHLLQEFD EGKRSCRRRL AGHNKRRRKT NPEPGANGNP SDDHSSNYLL 201: ITLLKILSNM HNHTGDQDLM SHLLKSLVSH AGEQLGKNLV ELLLQGGGSQ GSLNIGNSAL LGIEQAPQEE LKQFSARQDG TATENRSEKQ VKMNDFDLND 301: IYIDSDDTDV ERSPPPTNPA TSSLDYPSWI HQSSPPQTSR NSDSASDQSP SSSSEDAQMR TGRIVFKLFG KEPNEFPIVL RGQILDWLSH SPTDMESYIR 401: PGCIVLTIYL RQAETAWEEL SDDLGFSLGK LLDLSDDPLW TTGWIYVRVQ NQLAFVYNGQ VVVDTSLSLK SRDYSHIISV KPLAIAATEK AQFTVKGMNL 501: RQRGTRLLCS VEGKYLIQET THDSTTREDD DFKDNSEIVE CVNFSCDMPI LSGRGFMEIE DQGLSSSFFP FLVVEDDDVC SEIRILETTL EFTGTDSAKQ 601: AMDFIHEIGW LLHRSKLGES DPNPGVFPLI RFQWLIEFSM DREWCAVIRK LLNMFFDGAV GEFSSSSNAT LSELCLLHRA VRKNSKPMVE MLLRYIPKQQ 701: RNSLFRPDAA GPAGLTPLHI AAGKDGSEDV LDALTEDPAM VGIEAWKTCR DSTGFTPEDY ARLRGHFSYI HLIQRKINKK STTEDHVVVN IPVSFSDREQ 801: KEPKSGPMAS ALEITQIPCK LCDHKLVYGT TRRSVAYRPA MLSMVAIAAV CVCVALLFKS CPEVLYVFQP FRWELLDYGT S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)