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AT3G60030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : squamosa promoter-binding protein-like 12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
squamosa promoter-binding protein-like 12 (SPL12); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 1 (TAIR:AT2G47070.1); Has 969 Blast hits to 908 proteins in 50 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 0; Plants - 938; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIZ6eggNOG:ENOG4110DQFEMBL:AJ132096EMBL:AJ132097
EMBL:AL138658EMBL:BT003817EMBL:CP002686EnsemblPlants:AT3G60030
EnsemblPlants:AT3G60030.1entrez:825173EvolutionaryTrace:Q9S7P5ExpressionAtlas:Q9S7P5
Gene3D:1.25.40.20Gene3D:4.10.1100.10GeneID:825173Genevisible:Q9S7P5
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0046872Gramene:AT3G60030.1hmmpanther:PTHR31251
hmmpanther:PTHR31251:SF8HOGENOM:HOG000082688InParanoid:Q9S7P5InterPro:IPR004333
InterPro:IPR020683KEGG:ath:AT3G60030OMA:NGANHTEPaxDb:Q9S7P5
PDB:1WJ0PDBsum:1WJ0Pfam:PF03110Pfam:Q9S7P5
Pfscan:PS51141PhylomeDB:Q9S7P5PIR:T47827PRIDE:Q9S7P5
PRO:PR:Q9S7P5PROSITE:PS51141ProteinModelPortal:Q9S7P5Proteomes:UP000006548
RefSeq:NP_191562.1SMR:Q9S7P5STRING:3702.AT3G60030.1SUPFAM:SSF103612
SUPFAM:SSF48403TAIR:AT3G60030tair10-symbols:SPL12TMHMM:TMhelix
UniGene:At.502UniProt:C0SVF5UniProt:Q9S7P5
Coordinates (TAIR10) chr3:-:22165856..22169410
Molecular Weight (calculated) 104148.00 Da
IEP (calculated) 6.20
GRAVY (calculated) -0.49
Length 927 amino acids
Sequence (TAIR10)
(BLAST)
001: MEARIEGEVE GHSLEYGFSG KRSVEWDLND WKWNGDLFVA TQLNHGSSNS SSTCSDEGNV EIMERRRIEM EKKKKRRAVT VVAMEEDNLK DDDAHRLTLN
101: LGGNNIEGNG VKKTKLGGGI PSRAICCQVD NCGADLSKVK DYHRRHKVCE IHSKATTALV GGIMQRFCQQ CSRFHVLEEF DEGKRSCRRR LAGHNKRRRK
201: ANPDTIGNGT SMSDDQTSNY MLITLLKILS NIHSNQSDQT GDQDLLSHLL KSLVSQAGEH IGRNLVGLLQ GGGGLQASQN IGNLSALLSL EQAPREDIKH
301: HSVSETPWQE VYANSAQERV APDRSEKQVK VNDFDLNDIY IDSDDTTDIE RSSPPPTNPA TSSLDYHQDS RQSSPPQTSR RNSDSASDQS PSSSSGDAQS
401: RTDRIVFKLF GKEPNDFPVA LRGQILNWLA HTPTDMESYI RPGCIVLTIY LRQDEASWEE LCCDLSFSLR RLLDLSDDPL WTDGWLYLRV QNQLAFAFNG
501: QVVLDTSLPL RSHDYSQIIT VRPLAVTKKA QFTVKGINLR RPGTRLLCTV EGTHLVQEAT QGGMEERDDL KENNEIDFVN FSCEMPIASG RGFMEIEDQG
601: GLSSSFFPFI VSEDEDICSE IRRLESTLEF TGTDSAMQAM DFIHEIGWLL HRSELKSRLA ASDHNPEDLF SLIRFKFLIE FSMDREWCCV MKKLLNILFE
701: EGTVDPSPDA ALSELCLLHR AVRKNSKPMV EMLLRFSPKK KNQTLAGLFR PDAAGPGGLT PLHIAAGKDG SEDVLDALTE DPGMTGIQAW KNSRDNTGFT
801: PEDYARLRGH FSYIHLVQRK LSRKPIAKEH VVVNIPESFN IEHKQEKRSP MDSSSLEITQ INQCKLCDHK RVFVTTHHKS VAYRPAMLSM VAIAAVCVCV
901: ALLFKSCPEV LYVFQPFRWE LLEYGTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)