AT1G19110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : inter-alpha-trypsin inhibitor heavy chain-related | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
inter-alpha-trypsin inhibitor heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72500.1); Has 1620 Blast hits to 1609 proteins in 312 species: Archae - 28; Bacteria - 510; Metazoa - 544; Fungi - 65; Plants - 218; Viruses - 0; Other Eukaryotes - 255 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6602270..6605766 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 83022.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.73 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||
| Length | 754 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEDFARAVD DGLKLAKRIY FGKDRAVAAP RPPAPMDRSS TTQPYLPTAP MVYAVIPDPG IVDNPDLPSY QPHVHGRCDP PALIPLQMNS IELDVDCYLD 101: TALVTVTGSW RVHCVMGSKR CDCRIAIPMG EQGSILGVEV EIPRKSYTTQ LITAEDGNEF EKTALPETGG FLKPNIFTLT IPQVDGGTNL SIKMTWSQKL 201: TYNQGQFFLD IPFNFPEYVT PAVKKISKRE KIYLSVNAGT GTEVLCKGCS HQLKEKLRSA GKLRFAYEAD VLKWSNTDFS FSYTASSSNI VGGLFLQSAP 301: VHDVDQRDIF SFYLFPGKQQ KTKAFKREVV FVVDISKSMT GKPLEDVKNA ISTALSKLDP GDSFNIITFS NDTALFSTSM ESVTSDAVER GIEWMNKNFV 401: VADGTNMLPP LEKAVEMLSN TRGSIPMIFF VTDGSVEDER HICDVMKKHL ASAGSVFPRI HTFGLGVFCN HYFLQMLANI SCGQHESVYN TDHIEERMDK 501: LFTKALSTIL VNIAIEPLQS LDEVEVYPSN IPDLTSASPL MIYGRYRGKF PENVIAKGLL GDLSSFSTDL TVQSAKDMPL DKVFAKNVID LLTAEAWFSE 601: DKQLKEKIAK LSIQTGVLSE YTRMIQLENT EELKPSETGG KKKTTSNGEK QKMISRTIPL QSLGIGFGDK TATRENVPPG FGEQKAPDAA EKFVKAASSC 701: CVSLCNKCCC MCCVQCCSKL NDQCVLVFTQ LFTAIACIAC FECCSTVCCS GDDG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)