AT2G44230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF946) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF946); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT2G44260.1); Has 432 Blast hits to 414 proteins in 115 species: Archae - 0; Bacteria - 34; Metazoa - 43; Fungi - 133; Plants - 207; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18286537..18288247 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59897.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.70 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||
| Length | 542 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNNSSAQSS TPSLPIDSTF NLPSPLPSWP SGEGFAKGRI DLGGLEVSQV DTFNKVWTVY EGGQDNLGAT FFEPSSVPEG FSILGFYAQP NNRKLFGWTL 101: VGKDLSGDSL RPPVDYLLLW SGKSTKVENN KVETGYFWQP VPPDGYNAVG LIVTTSDEKP PLDKIRCVRS DLTDQSEPDA LIWETNGFSV SSSKPVNRGT 201: QASGVSVGTF FSNSPNPALP CLKNNNFDFS CMPSKPQIDA LFQTYAPWIY FHKDEKYLPS SVNWFFSNGA LLYKKGDESN PVPVEPNGLN LPQGEFNDGL 301: YWLDLPVASD ARKRVQCGDL QSMEVYLHIK PVFGGTFTDI AVWMFYPFNG PSRAKLKAAS IPLGRIGEHI GDWEHFTLRI SNFSGKLHRM YLSQHSGGSW 401: ADASEIEFQG GGNKPVAYAS LNGHAMYSKP GLVLQGKDNV GIRNDTGKSE KVIDTAVRFR VVAAEYMRGE LEEPAWLNYM RHWGPKIDYG HENEIRGVEK 501: IMVGESLKTT FRSAIKGLPN EVFGEEGPTG PKLKRNWLGD EV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)