AT2G19780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G29240.1); Has 60841 Blast hits to 20145 proteins in 804 species: Archae - 18; Bacteria - 2482; Metazoa - 7376; Fungi - 421; Plants - 47179; Viruses - 0; Other Eukaryotes - 3365 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8522831..8524039 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42845.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.70 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||||||||||
| Length | 402 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKKGTNNNN FSLLSLSLFL NCLILTNGYS IGVGVGIGGG DGDDGGVWIG GGNPNSNPGS APNQQQTTNA AYNALQSWKS AITEDPSGVL KTWVGEDVCS 101: YRGVFCSGSS ITSIDLNKAN LKGTIVKDLS LLSDLTILHL NSNRFSGQIP DSFKNLDSLQ ELDLSNNRFS GSFPQVTLYI PNLVYLDLRF NNFTGSIPEN 201: LFNKQLDAIL LNNNQFTGEI PGNLGYSTAS VINLANNKLS GEIPTSFGIT GSKLKEVLFL NNQLTGCIPE SVGLFSDIEV FDVSFNSLMG HVPDTISCLS 301: EIEVLNLGHN KFSGDLPDLV CTLRNLINLT VSFNFFSGFS SQCSSLSVGF DFTGNCIPGK GYQRPQPDCS AIPGGQLSCF RIPAQPLTCA AISLGLKVAS 401: SP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)