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AT1G12460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT1G62950.1); Has 167349 Blast hits to 109630 proteins in 4084 species: Archae - 101; Bacteria - 12513; Metazoa - 51063; Fungi - 7396; Plants - 77075; Viruses - 193; Other Eukaryotes - 19008 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G12460-MONOMERBioGrid:23043EC:2.7.11.1eggNOG:COG4886
eggNOG:ENOG410IHDYEMBL:AC025416EMBL:AC025417EMBL:AK317750
EMBL:BT002951EMBL:CP002684EMBL:FJ708633EnsemblPlants:AT1G12460
EnsemblPlants:AT1G12460.1entrez:837803Gene3D:3.80.10.10GeneID:837803
Genevisible:C0LGE4GO:GO:0004674GO:GO:0005524GO:GO:0005886
GO:GO:0016021Gramene:AT1G12460.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF7
HOGENOM:HOG000116551InParanoid:C0LGE4InterPro:IPR000719InterPro:IPR003591
InterPro:IPR011009InterPro:IPR013210InterPro:IPR032675KEGG:ath:AT1G12460
OMA:DQLCAPPPaxDb:C0LGE4Pfam:C0LGE4Pfam:PF00069
Pfam:PF07714Pfam:PF08263Pfscan:PS50011PhylomeDB:C0LGE4
PRIDE:C0LGE4PRO:PR:C0LGE4PROSITE:PS50011ProteinModelPortal:C0LGE4
Proteomes:UP000006548RefSeq:NP_172708.1SMART:SM00369SMR:C0LGE4
STRING:3702.AT1G12460.1SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT1G12460
TMHMM:TMhelixUniGene:At.42074UniGene:At.67669UniProt:C0LGE4
Coordinates (TAIR10) chr1:+:4247703..4250444
Molecular Weight (calculated) 97027.90 Da
IEP (calculated) 6.22
GRAVY (calculated) 0.05
Length 882 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKVHLFLVL VHFIYISTSR SDSISERDIL LQFKGSISDD PYNSLASWVS DGDLCNSFNG ITCNPQGFVD KIVLWNTSLA GTLAPGLSNL KFIRVLNLFG
101: NRFTGNLPLD YFKLQTLWTI NVSSNALSGP IPEFISELSS LRFLDLSKNG FTGEIPVSLF KFCDKTKFVS LAHNNIFGSI PASIVNCNNL VGFDFSYNNL
201: KGVLPPRICD IPVLEYISVR NNLLSGDVSE EIQKCQRLIL VDLGSNLFHG LAPFAVLTFK NITYFNVSWN RFGGEIGEIV DCSESLEFLD ASSNELTGRI
301: PTGVMGCKSL KLLDLESNKL NGSIPGSIGK MESLSVIRLG NNSIDGVIPR DIGSLEFLQV LNLHNLNLIG EVPEDISNCR VLLELDVSGN DLEGKISKKL
401: LNLTNIKILD LHRNRLNGSI PPELGNLSKV QFLDLSQNSL SGPIPSSLGS LNTLTHFNVS YNNLSGVIPP VPMIQAFGSS AFSNNPFLCG DPLVTPCNSR
501: GAAAKSRNSD ALSISVIIVI IAAAVILFGV CIVLALNLRA RKRRKDEEIL TVETTPLASS IDSSGVIIGK LVLFSKNLPS KYEDWEAGTK ALLDKENIIG
601: MGSIGSVYRA SFEGGVSIAV KKLETLGRIR NQEEFEQEIG RLGGLQHPNL SSFQGYYFSS TMQLILSEFV PNGSLYDNLH LRIFPGTSSS YGNTDLNWHR
701: RFQIALGTAK ALSFLHNDCK PAILHLNVKS TNILLDERYE AKLSDYGLEK FLPVMDSFGL TKKFHNAVGY IAPELAQQSL RASEKCDVYS YGVVLLELVT
801: GRKPVESPSE NQVLILRDYV RDLLETGSAS DCFDRRLREF EENELIQVMK LGLLCTSENP LKRPSMAEVV QVLESIRNGF GS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)