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AT1G34210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Predictors External Curations
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : somatic embryogenesis receptor-like kinase 2
Curator
Summary (TAIR10)
Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production.
Computational
Description (TAIR10)
somatic embryogenesis receptor-like kinase 2 (SERK2); FUNCTIONS IN: kinase activity; INVOLVED IN: pollen maturation, microsporogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: somatic embryogenesis receptor-like kinase 1 (TAIR:AT1G71830.1); Has 175230 Blast hits to 121098 proteins in 4288 species: Archae - 125; Bacteria - 16192; Metazoa - 44525; Fungi - 8981; Plants - 85819; Viruses - 391; Other Eukaryotes - 19197 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G34210-MONOMERBioGrid:25552DIP:DIP-61781NEC:2.7.11.1
eggNOG:ENOG410IGSHeggNOG:ENOG410ZNK7EMBL:AC007454EMBL:AF384969
EMBL:AK229715EMBL:CP002684EMBL:FJ708645EnsemblPlants:AT1G34210
EnsemblPlants:AT1G34210.1entrez:840320Gene3D:2.60.120.200Gene3D:3.80.10.10
GeneID:840320Genevisible:Q9XIC7GO:GO:0004674GO:GO:0005524
GO:GO:0005886GO:GO:0008289GO:GO:0009556GO:GO:0009742
GO:GO:0010152GO:GO:0016021GO:GO:0019199GO:GO:0033612
Gramene:AT1G34210.1hmmpanther:PTHR27001hmmpanther:PTHR27001:SF151HOGENOM:HOG000116554
InParanoid:Q9XIC7IntAct:Q9XIC7InterPro:IPR000719InterPro:IPR001611
InterPro:IPR008271InterPro:IPR011009InterPro:IPR013210InterPro:IPR013320
InterPro:IPR017441InterPro:IPR031048InterPro:IPR032675iPTMnet:Q9XIC7
KEGG:04150+2.7.11.1KEGG:04151+2.7.11.1KEGG:ath:AT1G34210KO:K13418
OMA:PQEYFFDPANTHER:PTHR27001:SF151PaxDb:Q9XIC7PDB:4Z61
PDBsum:4Z61Pfam:PF00069Pfam:PF00560Pfam:PF07714
Pfam:PF08263Pfam:Q9XIC7Pfscan:PS50011PhylomeDB:Q9XIC7
PIR:D86466PRIDE:Q9XIC7PRO:PR:Q9XIC7PROSITE:PS00107
PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:Q9XIC7Proteomes:UP000006548
RefSeq:NP_174683.1scanprosite:PS00107scanprosite:PS00108SMART:SM00220
SMR:Q9XIC7STRING:3702.AT1G34210.1SUPFAM:SSF52058SUPFAM:SSF56112
TAIR:AT1G34210tair10-symbols:ATSERK2tair10-symbols:SERK2TMHMM:TMhelix
UniGene:At.11393UniGene:At.48266UniProt:Q9XIC7
Coordinates (TAIR10) chr1:+:12459078..12462752
Molecular Weight (calculated) 69406.60 Da
IEP (calculated) 5.28
GRAVY (calculated) -0.10
Length 628 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRKKFEAFG FVCLISLLLL FNSLWLASSN MEGDALHSLR ANLVDPNNVL QSWDPTLVNP CTWFHVTCNN ENSVIRVDLG NADLSGQLVP QLGQLKNLQY
101: LELYSNNITG PVPSDLGNLT NLVSLDLYLN SFTGPIPDSL GKLFKLRFLR LNNNSLTGPI PMSLTNIMTL QVLDLSNNRL SGSVPDNGSF SLFTPISFAN
201: NLDLCGPVTS RPCPGSPPFS PPPPFIPPPI VPTPGGYSAT GAIAGGVAAG AALLFAAPAL AFAWWRRRKP QEFFFDVPAE EDPEVHLGQL KRFSLRELQV
301: ATDSFSNKNI LGRGGFGKVY KGRLADGTLV AVKRLKEERT PGGELQFQTE VEMISMAVHR NLLRLRGFCM TPTERLLVYP YMANGSVASC LRERPPSQLP
401: LAWSIRQQIA LGSARGLSYL HDHCDPKIIH RDVKAANILL DEEFEAVVGD FGLARLMDYK DTHVTTAVRG TIGHIAPEYL STGKSSEKTD VFGYGIMLLE
501: LITGQRAFDL ARLANDDDVM LLDWVKGLLK EKKLEMLVDP DLQSNYTEAE VEQLIQVALL CTQSSPMERP KMSEVVRMLE GDGLAEKWDE WQKVEVLRQE
601: VELSSHPTSD WILDSTDNLH AMELSGPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)