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AT4G19450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.957
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G45275.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJMIeggNOG:ENOG410YBHKEMBL:BT000872EMBL:CP002687
EnsemblPlants:AT4G19450EnsemblPlants:AT4G19450.1entrez:827686GeneID:827686
GO:GO:0016021Gramene:AT4G19450.1hmmpanther:PTHR21576hmmpanther:PTHR21576:SF7
HOGENOM:HOG000238416InterPro:IPR010658InterPro:IPR020846KEGG:ath:AT4G19450
OMA:QWLVITHPfam:PF06813PhylomeDB:Q8H132Proteomes:UP000006548
RefSeq:NP_567588.1SUPFAM:SSF103473TAIR:AT4G19450TCDB:2.A.1.75.5
TMHMM:TMhelixUniGene:At.28176UniProt:Q8H132
Coordinates (TAIR10) chr4:+:10606538..10609218
Molecular Weight (calculated) 62601.30 Da
IEP (calculated) 6.39
GRAVY (calculated) 0.58
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGQSRKWMI LVATIWIQAF TGTNFDFSAY SSDLKSVLGI SQVQLNYLAV ASDLGKVFGW SSGLALMYFP LWTVLFAAAF MGFVGYGVQW LVITHFISLP
101: YIMVFLCCLL AGLSICWFNT VCFVLCISNF PANRSLALSL TVSFNGVSAA LYTLAYNAIN PTSPELYLLL NALIPLIVSF TAIIPILRQP PFEPLPPDGV
201: RRDSLMFLLL NILAALNGVY LLLFGSNSSD LTSARLLFGG AILLLVFPLC IPGLVIARNW YNRTIHTSFR LEGSGFILVD PDELELHKGM LAHEANREGY
301: QLLSDDVVQN PVKSVAVEEE DSDESCCKKL ITRDQLEGLG IEHSLSLLLT RSDFWLYYIT YFCGGTIGLV YSNNLGQIAQ SLGQSSNTTT LVTLYSAFSF
401: FGRLLSATPD YIRAKVYFAR TGWLAIALLP TPFALFLLAS SGTASALQAG TALMGLSSGF IFAAAVSITS ELFGPNSVGV NHNILITNIP IGSLIYGFLA
501: ALVYDSHGFT GTKSMTSESV VCMGRDCYYL TFVWWGCLSL LGLGSSLVLF IRTRRAYQRF EQARISSNIN DS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)