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AT4G13460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SU(VAR)3-9 homolog 9
Curator
Summary (TAIR10)
Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.
Computational
Description (TAIR10)
SU(VAR)3-9 homolog 9 (SUVH9); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: DNA mediated transformation; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 2 (TAIR:AT2G33290.1); Has 2466 Blast hits to 2313 proteins in 188 species: Archae - 0; Bacteria - 14; Metazoa - 1497; Fungi - 154; Plants - 687; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G13460-MONOMERBioCyc:ARA:GQT-2273-MONOMEReggNOG:COG3440eggNOG:ENOG410IN61
EMBL:AF344452EMBL:AL049656EMBL:AL161536EMBL:CP002687
EnsemblPlants:AT4G13460EnsemblPlants:AT4G13460.1EnsemblPlants:AT4G13460.2entrez:826978
ExpressionAtlas:Q9T0G7Gene3D:2.30.280.10GeneID:826978Genevisible:Q9T0G7
GO:GO:0000775GO:GO:0003677GO:GO:0005634GO:GO:0008270
GO:GO:0009294GO:GO:0018024Gramene:AT4G13460.1Gramene:AT4G13460.2
hmmpanther:PTHR22884hmmpanther:PTHR22884:SF95HOGENOM:HOG000238382InParanoid:Q9T0G7
InterPro:IPR001214InterPro:IPR003105InterPro:IPR007728InterPro:IPR015947
InterPro:IPR025794KEGG:ath:AT4G13460KO:K11420OMA:YCAQRNG
PaxDb:Q9T0G7PDB:4NJ5PDBsum:4NJ5Pfam:PF00856
Pfam:PF02182Pfam:PF05033Pfam:Q9T0G7Pfscan:PS50280
Pfscan:PS50867Pfscan:PS51015Pfscan:PS51575PhylomeDB:Q9T0G7
PIR:T06648PRIDE:Q9T0G7PRO:PR:Q9T0G7PROSITE:PS50280
PROSITE:PS50867PROSITE:PS51015PROSITE:PS51575ProteinModelPortal:Q9T0G7
Proteomes:UP000006548RefSeq:NP_001031625.1RefSeq:NP_193082.1SMART:SM00317
SMART:SM00466SMART:SM00468SMR:Q9T0G7STRING:3702.AT4G13460.1
SUPFAM:SSF82199SUPFAM:SSF88697TAIR:AT4G13460tair10-symbols:SDG22
tair10-symbols:SET22tair10-symbols:SUVH9UniGene:At.3118UniProt:B9DGV6
UniProt:Q9T0G7
Coordinates (TAIR10) chr4:-:7824653..7826605
Molecular Weight (calculated) 72178.20 Da
IEP (calculated) 4.91
GRAVY (calculated) -0.35
Length 650 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSHIPLDP SLNPSPSLIP KLEPVTESTQ NLAFQLPNTN PQALISSAVS DFNEATDFSS DYNTVAESAR SAFAQRLQRH DDVAVLDSLT GAIVPVEENP
101: EPEPNPYSTS DSSPSVATQR PRPQPRSSEL VRITDVGPES ERQFREHVRK TRMIYDSLRM FLMMEEAKRN GVGGRRARAD GKAGKAGSMM RDCMLWMNRD
201: KRIVGSIPGV QVGDIFFFRF ELCVMGLHGH PQSGIDFLTG SLSSNGEPIA TSVIVSGGYE DDDDQGDVIM YTGQGGQDRL GRQAEHQRLE GGNLAMERSM
301: YYGIEVRVIR GLKYENEVSS RVYVYDGLFR IVDSWFDVGK SGFGVFKYRL ERIEGQAEMG SSVLKFARTL KTNPLSVRPR GYINFDISNG KENVPVYLFN
401: DIDSDQEPLY YEYLAQTSFP PGLFVQQSGN ASGCDCVNGC GSGCLCEAKN SGEIAYDYNG TLIRQKPLIH ECGSACQCPP SCRNRVTQKG LRNRLEVFRS
501: LETGWGVRSL DVLHAGAFIC EYAGVALTRE QANILTMNGD TLVYPARFSS ARWEDWGDLS QVLADFERPS YPDIPPVDFA MDVSKMRNVA CYISHSTDPN
601: VIVQFVLHDH NSLMFPRVML FAAENIPPMT ELSLDYGVVD DWNAKLAICN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)