AT2G45950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SKP1-like 20 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SKP1-like 20 (SK20); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: SKP1-like 21 (TAIR:AT3G61415.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18904611..18906967 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 39436.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||
| Length | 342 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEGDLAVMK PETMKSYIWL QTADGSIQQV EQEVAMFCPM ICQEVIQKGV GSSKNHAISL PQRVNPAMFS LILDYCRFHQ LPGRSNKERK TYDERFIRMD 101: TKRLCELTSA ADSLQLKPLV DLTSRALARI IEGKNPEEIR EIFHLPDDLT EEEKLEPLKN SMDDPRIRLL NRLYAKKRKE LKERERLKNV EVEEHVDERS 201: VDDLLSFING RDHKAVKMSK GKKKKKKKKD QKIVSSNNIH DKESHDLRSK QQCVEEIGSS MREVPNLLSA EDDISTPNAG SEDEDIDDEI DPAMRELLDR 301: EVEDFAQRLN SNWVRSLGKE RRPVHFSING NGTTRRHTGQ SP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)