suba logo
AT4G03000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G03365.1); Has 47741 Blast hits to 30371 proteins in 2147 species: Archae - 425; Bacteria - 7273; Metazoa - 21635; Fungi - 3461; Plants - 2162; Viruses - 230; Other Eukaryotes - 12555 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410IIFPeggNOG:ENOG410Y2TAEMBL:AF069442
EMBL:AK226608EMBL:AK229071EMBL:AL161495EMBL:CP002687
EnsemblPlants:AT4G03000EnsemblPlants:AT4G03000.1EnsemblPlants:AT4G03000.2entrez:828112
Gene3D:3.30.40.10GeneID:828112Genevisible:Q0WPJ7GO:GO:0008270
GO:GO:0016567GO:GO:0016874Gramene:AT4G03000.1Gramene:AT4G03000.2
hmmpanther:PTHR10044hmmpanther:PTHR10044:SF98HOGENOM:HOG000241208InParanoid:Q0WPJ7
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT4G03000ncoils:Coil
OMA:NQIEATWPaxDb:Q0WPJ7Pfam:PF13920Pfam:Q0WPJ7
Pfscan:PS50089PhylomeDB:Q0WPJ7PIR:T01393PRIDE:Q0WPJ7
PRO:PR:Q0WPJ7PROSITE:PS50089ProteinModelPortal:Q0WPJ7Proteomes:UP000006548
RefSeq:NP_192209.2RefSeq:NP_974504.1SMR:Q0WPJ7SUPFAM:SSF57850
TAIR:AT4G03000UniGene:At.34240UniPathway:UPA00143UniProt:Q0WPJ7
Coordinates (TAIR10) chr4:+:1324602..1327348
Molecular Weight (calculated) 90163.60 Da
IEP (calculated) 9.07
GRAVY (calculated) -0.76
Length 814 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEKQEEMNE FGAVNGGKVG TSSSVSPPQD KGRKNKRKLA DPSPQNAASL TEFPRYELHS FKSQSPLCEN DSNGQLKAEE SDSVGWDDPF ACHLEGLLSS
101: NLLTLFRSAM NQIMDCGYSE DVVLKAISSS RFYCGGTDLV SNIVNDTLSF LKSGKKVAGS RDYVFEDLQQ LVAYSLVEKI SLVREVRPSL STDEAMWRLL
201: ICDLNVLKAF EVDADGLEGS SVSNASKSSE SPVAECNPPK SSDADNPKAP VSNTQSKQSE PVKFGNFANV NNSKNPHASG ATPGKEVFSV STASGEGTKS
301: ASLTSVSDEK LVSCRKGRTK KEMAMLRQKS CVEKIRTYSK GGGYKTAKFG GFLVEKRGKS ASDLLSAQAR NSSSKITTEV MKIPLAESSS TLSNSTKSDS
401: PALDVKEHVT ALPANNAPAP VASEKKSGSE PEEKPSVSTK PAPDYYAAIP YDATLGIYIP RNKRDELILK LVPRMKDLQK ELQDWTDWAN QKVKQATVRL
501: LKDQPELKAL RKEKEEAEEF RKEKQLLEEN TIKRRSEMEL ALNNATNQLE RTNNTIRRLE LEQSLLKRER EAANIRASES AESCREAKER VQRLLKNSQS
601: WEGQKNLLQE ELKSQRDKVA GLQQEVAKAK TRQNQIEATW KQEKSATGKL TAQAAALKKE RGKLEELGKA EEERIKTKAE NDVKYYIENI KRLDTEISKL
701: KLKSDSLKIA ALKKGIDGNN DGNKSGMNHT TNTKANSMAS AKVWENNQGA ESKIKREREC VMCLSEEMSV IFLPCAHQVL CSKCNQLHEK EAMEDCPSCR
801: AKIQRRIQAR FARG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)