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AT1G02010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : secretory 1A
Curator
Summary (TAIR10)
member of KEULE Gene Family
Computational
Description (TAIR10)
secretory 1A (SEC1A); FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT1G12360.1); Has 1717 Blast hits to 1698 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 705; Fungi - 477; Plants - 219; Viruses - 0; Other Eukaryotes - 316 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5158eggNOG:KOG1300EMBL:AC020622EMBL:AF335539
EMBL:BX816413EMBL:CP002684EMBL:U89959EnsemblPlants:AT1G02010
EnsemblPlants:AT1G02010.1entrez:839288ExpressionAtlas:Q9C5P7Gene3D:3.40.50.1910
GeneID:839288GO:GO:0005623GO:GO:0006904GO:GO:0015031
hmmpanther:PTHR11679hmmpanther:PTHR11679:SF38HOGENOM:HOG000265497InParanoid:Q9C5P7
InterPro:IPR001619InterPro:IPR027482iPTMnet:Q9C5P7OMA:YSEARIC
PANTHER:PTHR11679PaxDb:Q9C5P7Pfam:PF00995Pfam:Q9C5P7
PhylomeDB:Q9C5P7PIR:B86152PIRSF:PIRSF005715PRIDE:Q9C5P7
PRO:PR:Q9C5P7ProteinModelPortal:Q9C5P7Proteomes:UP000006548RefSeq:NP_563643.4
SMR:Q9C5P7STRING:3702.AT1G02010.1SUPFAM:SSF56815TAIR:AT1G02010
tair10-symbols:SEC1AUniGene:At.42623UniProt:Q9C5P7
Coordinates (TAIR10) chr1:+:348046..352197
Molecular Weight (calculated) 76112.10 Da
IEP (calculated) 8.09
GRAVY (calculated) -0.49
Length 673 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFSDSESSS HGGGGGDYKF FRQISRDRLL HEMLGSTKTG DSKAWKILIM DRVTVKVMSQ SCKMADITDQ GISLVEELFK RREPMPGMDA IYFIQPSKEN
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHEQAL ETLYAEDAEN SRHFHICLNI MATRIATVFA
201: SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVELAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA GSPENKAKSG SFSLKFDAGK TKQANRKDRS
501: GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM RSRRTATWAR PHSSDDGYSS DSVLKSASTE
601: FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP QYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)