AT5G17580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.638 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phototropic-responsive NPH3 family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G03510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:5795302..5797031 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62935.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.53 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 548 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSASYVSDLH INVKGVPFHL CKEMLAKRSS KVSSLLERNE IDELRLILRD LEVDPETFEL VARFCNGSEF KFTSDTIVSV LCIAYYLGMN EEQSSNNLLG 101: KASEFLEHRV FPSWSETINA LRSGDKSFDK LADVGLVDVF FDSLIEKASY DPRLLGELIK NRAETDDYRP NPRRRLFVID WKSEDLITIP LRLYEPFMIR 201: AIKSRSIPVE YIVLSVCKYA KKWVFDTEES LSGQKREAIE VVERLLPYQR GLISCELLFE SLKHSIWLEA SSECQNGFMI RICKQLDMAK STDLKILSRG 301: YGEKAEGFEN IELVKTVVKS FYTYYANEDS ETVSHFVKVA KLSEEFLFLA ASEASLKLEA FVELAEMTVA VSQGILSYSD GIYRAIDVFL ESHRYLTESE 401: KMEVCKVLEC GKLSQEGFER AAKNQKLPLR IVVNVLCVSQ LQIRDTVAKE IKGMEEKVDE EEEEEIEVSS DEDEMEKMSN KLLGLEIEND ECVVHRRKNM 501: KKKKKKISVW GQVKRKFGCL NSSSSSYSVD ACTCDVKKKK KKIHHHYE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)