AT3G24560.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.992 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Adenine nucleotide alpha hydrolases-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
novel gene involved in embryogenesis | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RASPBERRY 3 (RSY3); CONTAINS InterPro DOMAIN/s: PP-loop (InterPro:IPR011063); Has 1377 Blast hits to 1377 proteins in 336 species: Archae - 0; Bacteria - 610; Metazoa - 2; Fungi - 15; Plants - 23; Viruses - 0; Other Eukaryotes - 727 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:8964542..8966494 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51559.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.30 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||
| Length | 462 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQMTSWMQAE LFILRLSRSS GVLGLAGTAF ASEIFSRNLQ LDAKHMKNQS IRLVRPLLDL WKEDMYKICQ WGRQDWVEDP TNRSQLFVRN RIRTSIGNLE 101: SGSFKSELQA VISECRRTRS FVDKVCTDLI HQTVTVTDKG YAILDLERLN PSGVKDICLS KYLFAVLQFI SQRQRPIRGN TSKLLLNYIR AIPCRTSLTA 201: AGCYLSPAPG SKGTKIIVSC SVDCPLPSKT ELLNISFNET PSDDLGQIIA DAKSFSDHVA PTSLFEVQFL DVASESVLSK ARELNLLSES TYTTIGLLQR 301: DETKRFLTKT EEKSVELEHG TNIAASSDKV HLCLGQNLYF MNRFLIRWNL SDHQCNEADC RNCPVSTATS MEVRHMVEPD WLYLAELSKC STSNHSISSS 401: QKALRSLKLI PAAARKSLPV LVNHCGLLLC IPAIGFSYCS CLEASAVFLP RIPLGGGHSS FL |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)