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AT4G21585.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : endonuclease 4
Curator
Summary (TAIR10)
Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.
Computational
Description (TAIR10)
endonuclease 4 (ENDO4); FUNCTIONS IN: endonuclease activity, nucleic acid binding; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: endonuclease 5 (TAIR:AT4G21600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EC:3.1.30.1eggNOG:ENOG410IF74eggNOG:ENOG4111UE2EMBL:AL022603
EMBL:CP002687EnsemblPlants:AT4G21585EnsemblPlants:AT4G21585.1entrez:828244
Gene3D:1.10.575.10GeneID:828244GO:GO:0003676GO:GO:0004519
GO:GO:0006308GO:GO:0046872Gramene:AT4G21585.1hmmpanther:PTHR33146
hmmpanther:PTHR33146:SF2InParanoid:F4JJL0InterPro:IPR003154InterPro:IPR008947
KEGG:ath:AT4G21585OMA:KNITHEWPaxDb:F4JJL0Pfam:F4JJL0
Pfam:PF02265PhylomeDB:F4JJL0PRIDE:F4JJL0PRO:PR:F4JJL0
ProteinModelPortal:F4JJL0Proteomes:UP000006548RefSeq:NP_680734.1SMR:F4JJL0
STRING:3702.AT4G21585.1SUPFAM:SSF48537TAIR:AT4G21585tair10-symbols:ENDO4
UniGene:At.54459UniProt:F4JJL0
Coordinates (TAIR10) chr4:+:11477988..11479953
Molecular Weight (calculated) 34205.50 Da
IEP (calculated) 6.97
GRAVY (calculated) -0.38
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSLRQWFA RVLVLTQLIN GALCWGKEGH YTVCKIAESY FEEETVAAVK KLLPKSADGD LASVCSWPDE IKHHWQWRWT SPLHYVDTPD YRCNYEYCRD
101: CHDTHKNQDR CVTGAIFNYT MQLMSASENS DTIVHYNLTE ALMFLSHFIG DIHQPLHVGF LGDEGGNTIT VRWYRRKTNL HHVWDNMIIE SALKTYYNKS
201: LPLMIEALQA NLTNDWSNDV PLWESCQLNQ TACPNPYASE SINLACKYAY RNATPGTTLG DDYFLSRLPI VEKRLAQGGI RLAATLNRIF SSKPKHAGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)