AT4G10890.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:6688833..6692937 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 60019.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.79 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||
| Length | 527 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLTRRYGLQE LENVYLEESV AMFLEEVDKN RTVRDIVARY QQSLNVVKRK IDDVLSALLK FAADTLKSQE SHDTKVLKYC ARNESFSPHP SNRKYYLVNS 101: VYPTTTGYLG PHRRILYHLG QFGRGGPPVT VQELFNRKHL DLRSVIDRTF GVWKAKWRIL DHTCKNVNIA INVTKTNINH ASATTVTAAT TTPKQTKICS 201: RVCSRCYHYS MRQKLRHSLH TRILKSNSEN AILFSEEEEE MAEKQRWIAM YTKHLKQKRK VYHDGFLDLH IARKKVMLYD EDDNLLESRT LKACEVVNTG 301: ETLTFQAYLV DICDPKDGSK ASSEPKVEPS DQKCARKPFT VLRPNFKKSS LRCDEKKPDL VNKFSSKSLS PSHNMIRVFK KRELHKYGAL TPDSTTKGTV 401: SLGSVDKESN NHPLINSPCT GRSVVDSRLE NCKLSKDVPP PKPLRDVNQI LSILQKRNAT ETCSDNNMQT SVLLTKVPPE SETSKRHKME SISTKEASTE 501: QVMVQETSSA STRGCLMSDP PSFDLGI |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)