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AT3G62800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : double-stranded-RNA-binding protein 4
Curator
Summary (TAIR10)
Encodes a nuclear dsRNA-binding protein that interacts specifically with DCL4. May regulate DCL4 function and thereby affect miRNA biogenesis. DRB4 interacts with the P6 viral protein from Cauliflower mosaic virus and may be a target of viral silencing suppression.
Computational
Description (TAIR10)
double-stranded-RNA-binding protein 4 (DRB4); FUNCTIONS IN: double-stranded RNA binding, protein binding; INVOLVED IN: production of ta-siRNAs involved in RNA interference; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 3 (TAIR:AT3G26932.2); Has 942 Blast hits to 869 proteins in 284 species: Archae - 0; Bacteria - 434; Metazoa - 166; Fungi - 2; Plants - 266; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
Protein Annotations
BioGrid:10769eggNOG:ENOG410IZANeggNOG:ENOG410YPSHEMBL:AB455097
EMBL:AL162651EMBL:AY074363EMBL:AY150509EMBL:CP002686
EnsemblPlants:AT3G62800EnsemblPlants:AT3G62800.1EnsemblPlants:AT3G62800.2entrez:825455
Gene3D:3.30.160.20GeneID:825455Genevisible:Q8H1D4GO:GO:0003725
GO:GO:0005634GO:GO:0010267GO:GO:0016032GO:GO:0035196
GO:GO:0051607GO:GO:0060145GO:GO:0070919hmmpanther:PTHR10910
hmmpanther:PTHR10910:SF95HOGENOM:HOG000072681InParanoid:Q8H1D4IntAct:Q8H1D4
InterPro:IPR014720iPTMnet:Q8H1D4KEGG:ath:AT3G62800OMA:HAPRFRC
PaxDb:Q8H1D4Pfam:PF00035Pfam:Q8H1D4Pfscan:PS50137
PhylomeDB:Q8H1D4PIR:T48069PRIDE:Q8H1D4PRO:PR:Q8H1D4
PROSITE:PS50137ProteinModelPortal:Q8H1D4Proteomes:UP000006548RefSeq:NP_001154686.1
RefSeq:NP_191839.2RefSeq:NP_974480.1SMART:SM00358SMR:Q8H1D4
STRING:3702.AT3G62800.1SUPFAM:SSF54768TAIR:AT3G62800tair10-symbols:DRB4
UniGene:At.34049UniProt:Q8H1D4
Coordinates (TAIR10) chr3:-:23225749..23227163
Molecular Weight (calculated) 38418.10 Da
IEP (calculated) 6.00
GRAVY (calculated) -0.48
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)