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AT5G58005.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cytochrome c oxidase, subunit Vib family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cytochrome c oxidase, subunit Vib family protein; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit VIb (InterPro:IPR003213); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J15EeggNOG:ENOG4112119EMBL:AK118976EMBL:AK317104
EMBL:AY080882EMBL:AY122992EMBL:CP002688EnsemblPlants:AT5G58005
EnsemblPlants:AT5G58005.1EnsemblPlants:AT5G58005.2entrez:835912Gene3D:1.10.10.140
GeneID:835912GO:GO:0004129GO:GO:0005739Gramene:AT5G58005.1
Gramene:AT5G58005.2hmmpanther:PTHR11387HOGENOM:HOG000242830InterPro:IPR003213
KEGG:ath:AT5G58005OMA:TEIATVGPfam:PF02297PhylomeDB:Q8RXH9
Proteomes:UP000006548RefSeq:NP_001032092.1RefSeq:NP_680453.1STRING:3702.AT5G58005.1
TAIR:AT5G58005UniGene:At.44021UniProt:Q8RXH9
Coordinates (TAIR10) chr5:+:23482234..23482757
Molecular Weight (calculated) 13298.60 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.89
Length 116 amino acids
Sequence (TAIR10)
(BLAST)
001: MALDTYASSN PNDVHEDVLL KARDACYKAR DAFYACLEKE SGKKPTEIAT VGLLYPKECS NSRTQFVNNC RSSWVKHFDR EYCRNKRVQR LLDDGDERKG
101: PMSLPQPYTF KPSPST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)