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AT4G15820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: embryo defective 1703 (TAIR:AT3G61780.1); Has 524 Blast hits to 443 proteins in 102 species: Archae - 0; Bacteria - 13; Metazoa - 196; Fungi - 37; Plants - 43; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY93eggNOG:ENOG41116AMEMBL:CP002687EnsemblPlants:AT4G15820
EnsemblPlants:AT4G15820.1entrez:827263GeneID:827263GO:GO:0016021
Gramene:AT4G15820.1hmmpanther:PTHR34962hmmpanther:PTHR34962:SF2InParanoid:F4JKW8
KEGG:ath:AT4G15820ncoils:CoilOMA:DQDISEGPaxDb:F4JKW8
PRIDE:F4JKW8ProteinModelPortal:F4JKW8Proteomes:UP000006548RefSeq:NP_193317.6
TAIR:AT4G15820TMHMM:TMhelixUniGene:At.48861UniGene:At.68470
UniProt:F4JKW8
Coordinates (TAIR10) chr4:+:8992970..8995022
Molecular Weight (calculated) 51277.30 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.71
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVFRCAVFL SPSSFLPSYS TGRRVSNPKS KAQETVIIGI ETPENDPSSD VVSDVEEIQV LSSSVVSNEV NGISTKISPK LVAKYGLWLI GIFAFQTVCA
101: VLFLGDSTKS EKTPEVSSDS EGNNLVLLED VEMNEKIAEI RMMAREARKS EGKQEEDDET GIDIEKEIEA RLSNMEKRLN SQRKGLAGLR VEPLDESGND
201: EKSLMFEKKY KFKAEKPPMG NVKGFGGSKG SDEIMSGTEK TGKNGSASES RDGEKNPEEQ LQESVFRDGA AQESEQRRPS NEVKKSRKSG NRVGGTPNMK
301: AGSGFGSTSL SEKHGDVRKG KPLRRAKEKQ SEKENKLWWL KLPYVLRILM RSNIDQDISE GYFTLRTESM EQNEGQVSHM IAFEDQSDAR NFSYLLESVF
401: EDLDDFSADI APVTTKDLYD EVSSGGKNVI VVRKRQLTLY AGQPFEDVER ALRTLIQERR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)