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AT4G01570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 59349 Blast hits to 13105 proteins in 268 species: Archae - 8; Bacteria - 24; Metazoa - 241; Fungi - 448; Plants - 57026; Viruses - 0; Other Eukaryotes - 1602 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y9FXeggNOG:KOG4197EMBL:AF096370EMBL:AF104919
EMBL:AL161492EMBL:AY065015EMBL:BT001133EMBL:CP002687
EnsemblPlants:AT4G01570EnsemblPlants:AT4G01570.1entrez:828133Gene3D:1.25.40.10
GeneID:828133Genevisible:Q8VZE4Gramene:AT4G01570.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF479HOGENOM:HOG000240365InParanoid:Q8VZE4InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT4G01570OMA:YNTLIEVPaxDb:Q8VZE4
Pfam:PF01535Pfam:PF13041Pfam:PF13812Pfam:Q8VZE4
Pfscan:PS51375PhylomeDB:Q8VZE4PIR:D85020PIR:T01937
PRIDE:Q8VZE4PRO:PR:Q8VZE4PROSITE:PS51375ProteinModelPortal:Q8VZE4
Proteomes:UP000006548RefSeq:NP_192066.2SMR:Q8VZE4STRING:3702.AT4G01570.1
TAIR:AT4G01570TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.28284
UniGene:At.66612UniProt:Q8VZE4
Coordinates (TAIR10) chr4:+:679487..681904
Molecular Weight (calculated) 89938.60 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.17
Length 805 amino acids
Sequence (TAIR10)
(BLAST)
001: MRHGRGSAVS AAISGLSPAK NSPFPQLCNV LLVASLSKTL SQSGTRSLDA NSIPISEPVV LQILRRNSID PSKKLDFFRW CYSLRPGYKH SATAYSQIFR
101: TVCRTGLLGE VPDLLGSMKE DGVNLDQTMA KILLDSLIRS GKFESALGVL DYMEELGDCL NPSVYDSVLI ALVKKHELRL ALSILFKLLE ASDNHSDDDT
201: GRVIIVSYLP GTVAVNELLV GLRRADMRSE FKRVFEKLKG MKRFKFDTWS YNICIHGFGC WGDLDAALSL FKEMKERSSV YGSSFGPDIC TYNSLIHVLC
301: LFGKAKDALI VWDELKVSGH EPDNSTYRIL IQGCCKSYRM DDAMRIYGEM QYNGFVPDTI VYNCLLDGTL KARKVTEACQ LFEKMVQEGV RASCWTYNIL
401: IDGLFRNGRA EAGFTLFCDL KKKGQFVDAI TFSIVGLQLC REGKLEGAVK LVEEMETRGF SVDLVTISSL LIGFHKQGRW DWKEKLMKHI REGNLVPNVL
501: RWNAGVEASL KRPQSKDKDY TPMFPSKGSF LDIMSMVGSE DDGASAEEVS PMEDDPWSSS PYMDQLAHQR NQPKPLFGLA RGQRVEAKPD SFDVDMMNTF
601: LSIYLSKGDL SLACKLFEIF NGMGVTDLTS YTYNSMMSSF VKKGYFQTAR GVLDQMFENF CAADIATYNV IIQGLGKMGR ADLASAVLDR LTKQGGYLDI
701: VMYNTLINAL GKATRLDEAT QLFDHMKSNG INPDVVSYNT MIEVNSKAGK LKEAYKYLKA MLDAGCLPNH VTDTILDYLG KEMEKARFKK ASFVRNKPNN
801: NNISS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)