AT3G49730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G65820.1); Has 44976 Blast hits to 14279 proteins in 285 species: Archae - 4; Bacteria - 30; Metazoa - 692; Fungi - 575; Plants - 42339; Viruses - 0; Other Eukaryotes - 1336 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18445730..18447646 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73233.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.59 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 638 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRRFSTIVDL LISKKPSSQA NSRIDLICKR FHISRVLNND FVESTERKNG VGLVCPEKHE DEFAGEVEKI YRILRNHHSR VPKLELALNE SGIDLRPGLI 101: IRVLSRCGDA GNLGYRFFLW ATKQPGYFHS YEVCKSMVMI LSKMRQFGAV WGLIEEMRKT NPELIEPELF VVLMRRFASA NMVKKAVEVL DEMPKYGLEP 201: DEYVFGCLLD ALCKNGSVKE ASKVFEDMRE KFPPNLRYFT SLLYGWCREG KLMEAKEVLV QMKEAGLEPD IVVFTNLLSG YAHAGKMADA YDLMNDMRKR 301: GFEPNVNCYT VLIQALCRTE KRMDEAMRVF VEMERYGCEA DIVTYTALIS GFCKWGMIDK GYSVLDDMRK KGVMPSQVTY MQIMVAHEKK EQFEECLELI 401: EKMKRRGCHP DLLIYNVVIR LACKLGEVKE AVRLWNEMEA NGLSPGVDTF VIMINGFTSQ GFLIEACNHF KEMVSRGIFS APQYGTLKSL LNNLVRDDKL 501: EMAKDVWSCI SNKTSSCELN VSAWTIWIHA LYAKGHVKEA CSYCLDMMEM DLMPQPNTYA KLMKGLNKLY NRTIAAEITE KVVKMASERE MSFKMYKKKG 601: EEDLIEKAKP KGNKEGKKKG TDHQRYKGRG ERSRAKAL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)