AT5G15010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G80880.1); Has 37863 Blast hits to 13191 proteins in 288 species: Archae - 3; Bacteria - 35; Metazoa - 443; Fungi - 342; Plants - 35932; Viruses - 0; Other Eukaryotes - 1108 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4857241..4858959 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65951.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.41 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||
| Length | 572 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRGIFLIRSR LSIFRAPAVK CLRFSNVLPS LSNNCIVRLY MEPPVACVLP LGLCSMFSTS IADSEQVGFT RSNIEKDDES DIDLGCSISD ELVSEDVGKI 101: SKLVKDCGSD RKELRNKLEE CDVKPSNELV VEILSRVRND WETAFTFFVW AGKQQGYVRS VREYHSMISI LGKMRKFDTA WTLIDEMRKF SPSLVNSQTL 201: LIMIRKYCAV HDVGKAINTF HAYKRFKLEM GIDDFQSLLS ALCRYKNVSD AGHLIFCNKD KYPFDAKSFN IVLNGWCNVI GSPREAERVW MEMGNVGVKH 301: DVVSYSSMIS CYSKGGSLNK VLKLFDRMKK ECIEPDRKVY NAVVHALAKA SFVSEARNLM KTMEEEKGIE PNVVTYNSLI KPLCKARKTE EAKQVFDEML 401: EKGLFPTIRT YHAFMRILRT GEEVFELLAK MRKMGCEPTV ETYIMLIRKL CRWRDFDNVL LLWDEMKEKT VGPDLSSYIV MIHGLFLNGK IEEAYGYYKE 501: MKDKGMRPNE NVEDMIQSWF SGKQYAEQRI TDSKGEVNKG AIVKKSEREK NFLQQPEVRK VVREHGYSFW DE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)