AT3G16010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 55395 Blast hits to 14888 proteins in 319 species: Archae - 4; Bacteria - 71; Metazoa - 778; Fungi - 987; Plants - 51638; Viruses - 0; Other Eukaryotes - 1917 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5434142..5436244 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72929.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.94 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 642 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMYVSARSGS AKRSISSLPH LSQRFKQTEN EIVQMFSVPN HEESEKPQEK WKLSRKDPSV RMLDERFIRI VKIFKWGPDA EKALEVLKLK VDHRLVRSIL 101: EIDVEINVKI QFFKWAGKRR NFQHDCSTYM TLIRCLEEAR LYGEMYRTIQ EVVRNTYVSV SPAVLSELVK ALGRAKMVSK ALSVFYQAKG RKCKPTSSTY 201: NSVILMLMQE GQHEKVHEVY TEMCNEGDCF PDTITYSALI SSYEKLGRND SAIRLFDEMK DNCMQPTEKI YTTLLGIYFK VGKVEKALDL FEEMKRAGCS 301: PTVYTYTELI KGLGKAGRVD EAYGFYKDML RDGLTPDVVF LNNLMNILGK VGRVEELTNV FSEMGMWRCT PTVVSYNTVI KALFESKAHV SEVSSWFDKM 401: KADSVSPSEF TYSILIDGYC KTNRVEKALL LLEEMDEKGF PPCPAAYCSL INALGKAKRY EAANELFKEL KENFGNVSSR VYAVMIKHFG KCGKLSEAVD 501: LFNEMKNQGS GPDVYAYNAL MSGMVKAGMI NEANSLLRKM EENGCRADIN SHNIILNGFA RTGVPRRAIE MFETIKHSGI KPDGVTYNTL LGCFAHAGMF 601: EEAARMMREM KDKGFEYDAI TYSSILDAVG NVDHEKDDVS SF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)