AT1G52520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAR1-related sequence 6 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAR1-related sequence 6 (FRS6); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 8 (TAIR:AT1G80010.1); Has 1626 Blast hits to 1478 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 91; Plants - 1518; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19565933..19568248 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81608.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 703 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERSESVDED VQASAYLEND EVRERDDPMS DTLRIGEEAL VCSSEHEIDV GFCQNEERKS EEETMGGFDE QSGLLVDERK EFDAPAVGME FESYDDAYNY 101: YNCYASEVGF RVRVKNSWFK RRSKEKYGAV LCCSSQGFKR INDVNRVRKE TRTGCPAMIR MRQVDSKRWR VVEVTLDHNH LLGCKLYKSV KRKRKCVSSP 201: VSDAKTIKLY RACVVDNGSN VNPNSTLNKK FQNSTGSPDL LNLKRGDSAA IYNYFCRMQL TNPNFFYLMD VNDEGQLRNV FWADAFSKVS CSYFGDVIFI 301: DSSYISGKFE IPLVTFTGVN HHGKTTLLSC GFLAGETMES YHWLLKVWLS VMKRSPQTIV TDRCKPLEAA ISQVFPRSHQ RFSLTHIMRK IPEKLGGLHN 401: YDAVRKAFTK AVYETLKVVE FEAAWGFMVH NFGVIENEWL RSLYEERAKW APVYLKDTFF AGIAAAHPGE TLKPFFERYV HKQTPLKEFL DKYELALQKK 501: HREETLSDIE SQTLNTAELK TKCSFETQLS RIYTRDMFKK FQIEVEEMYS CFSTTQVHVD GPFVIFLVKE RVRGESSRRE IRDFEVLYNR SVGEVRCICS 601: CFNFYGYLCR HALCVLNFNG VEEIPLRYIL PRWRKDYKRL HFADNGLTGF VDGTDRVQWF DQLYKNSLQV VEEGAVSLDH YKVAMQVLQE SLDKVHSVEE 701: KQD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)