AT5G08010.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.977 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61040.1); Has 5732 Blast hits to 4319 proteins in 440 species: Archae - 66; Bacteria - 397; Metazoa - 2437; Fungi - 292; Plants - 238; Viruses - 35; Other Eukaryotes - 2267 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:2569606..2571613 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 63980.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.42 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||
| Length | 566 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLWLIAATA ATGYITKHLR NVSKGKSSSE DLTNVKLESP RCLASNVVRV KKPKEENFED CLNGETLDLY ECGNAYGVEV ASNNEEDLGY DDEIRSGSFG 101: NRAFLRRNQC PIKPFSLEKS IMSRLHREKI SMEEYMRSPF PSPCGSVSRP LLVTDGTNVI SKNTGDSVSQ QVSECGIPQL RKLKSSLLYA KRGVGDAKSV 201: SRRSDNGTGS NDPVLVLCVG ISIGIMSSFV ANQTELNKVR AESKQTENLG KELEDDIHDG EKQCDEKTAE NSESISKIEA ELEAELERLE INMISSNIET 301: KLSDVFELEP DFEVEFAQGE LRDDQVERQR FDETVSNQER SSNSTPESGN YIVSPRELSL RLLGVINSCY EKRIKELENA LQESQRKVEQ LVIESEEKKK 401: PLSRIWETHE EMKYKRGSNP PVSVAHIEKK HNPAEIQPLV MTLEGEALDA FNESYEELMD INDYSEEDDL QCVMQENERQ EELSLTSKSS PWSHKDYIKD 501: SSRTSEDVNL SMLQDLLGLS DEEEEEEDEM EKHLIKQIVE KTKQGSSAVL NAQKMLFLME EIQPNL |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)