suba logo
AT5G40520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 3679 Blast hits to 2474 proteins in 390 species: Archae - 10; Bacteria - 571; Metazoa - 1012; Fungi - 528; Plants - 214; Viruses - 74; Other Eukaryotes - 1270 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIMUeggNOG:ENOG410Y64YEMBL:AK175300EMBL:CP002688
EnsemblPlants:AT5G40520EnsemblPlants:AT5G40520.1entrez:834050ExpressionAtlas:Q682R7
GeneID:834050Gramene:AT5G40520.1hmmpanther:PTHR36071hmmpanther:PTHR36071:SF1
HOGENOM:HOG000140927Proteomes:UP000006548RefSeq:NP_198868.2TAIR:AT5G40520
UniGene:At.7409UniProt:Q682R7
Coordinates (TAIR10) chr5:-:16231515..16233546
Molecular Weight (calculated) 65607.10 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.74
Length 574 amino acids
Sequence (TAIR10)
(BLAST)
001: MILTGGSTSF DKTRLKMKEI IRDSVRRDFG KNKEGIGKEE IINQLHQVLS DPANFREDCR MNLGRTPTLH SHRDAAMKVL NELDSLSTQT LRAMKRKLKG
101: SRMIPQLKNS RRGQRRSDLI NQVRQASEKM LSELSAGDKL QEQLAKALSV VDLSLKLSPG YKTAAATDFF RFSPETKNLQ NEIVKAVWLL RKVRFRELKR
201: LHLCLDPEAE VSNDSLRSAV RKTLIEYLFE CSDLDTIPKS LMEALSLVNS RTGNVEHKVC PREAIEEETE CILNVSAQVK QIFCQCIPNY ELDQDFGDAY
301: MEDLEDSDDN DDDDDDDDDD DENCNLFDNE KLGNKEESRC RNIKLEVKDT QDDAMESSDS DHEESGAECL VLDPTDSTHE TNQHDFSSSV NRVVVRDLPE
401: SITRVYPRSL YVTPTSNKSI VISDRHDIAM SKTRVKVERD IEMEVDNQFS SRSLFSVENI KSDDHGEQKP RRRNKNQYLA IQEISDETSL VAHNLIGRLL
501: EKFADRQRLN LETDERSYLG GESRLQEKVE VSEKKQASSQ AKSDEAIILS VVKEQITSLE ESVLMRLKEL MEVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)